UFO06163.5prime Sequence
1122 bp (1010 high quality bases) assembled on 2009-08-08
> UFO06163.5prime
CAGTCGACATGGCGGCTATGGCCAATCTTCACAACACGCGCATGCTACGC
TTCTTTTTAGTCCTAATCGTGGTGATCCTAACCATTTTCATCTACGCCTC
GTACTCAACGACTAGCACCCTCACAGCGAACCATGTGCACCCTGCGGCAT
CACCGCCACAGCAGCTGATTGGCAGTCATCCTGGGCGACAGCCCATGGAC
CAAGTGCCGCCAGTCAATAGCACGGATAAGGAGTACAATTCGCCACCTGG
TGAAAGTTCGTCTAAGCAGCAAAGCGTATCCAGCAGACACTCGCAACAAT
TACCGCCGCAACAGGCAGAGATACACAAGAGGCATCCGCAGCACCGCCTG
CCCACCATCGACGAGGATGCTCTGCTCGACGGTGGCTCCGCGGGCGCCAG
TCCCCAGGTTGGTGGCCCTGACCAAACGCCCAATGTTATGGCGGATGAGC
TGCTGGAGGAGCAGCAGTATGGTCAGAGTGTTGATGGCATCACAGGCAAC
ATCAACAGTAGCACCAACAACAACAGCTCTGCCGACACGTTGGCTGTTAA
ACAATCGATTCCCGCCCAGTCACCACAACAACAACTGCCCCAGTCACAGT
CGCAGGTGCAGCCAGGCCTTTCCGATGCCGACCTCCTCATACCCACTTCC
AATTTGCAAAAGTTTATTGAGAACGCCGATAGGATACTGAAGAACATCAC
TTCGAACAGTAGCACGGGCAATCCATCGGATATGGCACAACTCAACGCAG
TGGACGGTAAACTGGAAGTCTCGGGCGTTGAGTCCGAAAAGCAGGAACCG
GAATCCAAGGTGATACAGGAAATTAAAGGAGGCCAAGAAAGAGGCGGCAG
TCCCTCTGCCAAAATCCGCAAAACCACCAGTGCCACCTGTGAAAACGACG
AAGAGCAAGTGCCAAGTGCTCCTGTAGATCCCTCCAAGGAGTGGCCACCG
AGACACTCTACGAGCCAGCCACGTGGATGAGAGATCGATGCGGAGCGCAT
ATGTCGAAAGGCGAAGTTATAGCTCTGATCTTATTAGCTCAGCGATGTCT
CACGATGCAGCCCGCATGTCATCGGCCGACTGATGCATACCGGAACGAAA
AAGGACTGCATGCATTGTCCTA
UFO06163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8668-RB | 3215 | CG8668-RB | 1111..2224 | 8..1106 | 5070 | 97.8 | Plus |
| CG8668-RA | 2889 | CG8668-RA | 785..1898 | 8..1106 | 5070 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8131425..8131913 | 8..496 | 2445 | 100 | Plus |
| 2L | 23513712 | 2L | 8132594..8132958 | 717..1070 | 1275 | 95.6 | Plus |
| 2L | 23513712 | 2L | 8131968..8132199 | 491..722 | 1145 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 19:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2508 | 448..612 | 145 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2419 | 481..604 | 144 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7070 | 448..675 | 141 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2486 | 487..614 | 135 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2437..2478 | 486..527 | 120 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2826 | 487..527 | 115 | 75.6 | Plus |
UFO06163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:34 Download gff for
UFO06163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8668-RA | 752..1857 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:15 Download gff for
UFO06163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8668-RA | 775..1880 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:21 Download gff for
UFO06163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8668-RA | 775..1880 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:21 Download gff for
UFO06163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8131415..8131912 | 1..495 | 99 | -> | Plus |
| 2L | 8131973..8132194 | 496..717 | 100 | -> | Plus |
| 2L | 8132595..8132980 | 718..1088 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:15 Download gff for
UFO06163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8131415..8131912 | 1..495 | 99 | -> | Plus |
| arm_2L | 8131973..8132194 | 496..717 | 100 | -> | Plus |
| arm_2L | 8132595..8132980 | 718..1088 | 95 | | Plus |
