UFO06164.5prime Sequence
1123 bp (1016 high quality bases) assembled on 2009-08-08
> UFO06164.5prime
CAGTCGACATGGCCAAGCTAGCGACGGATCCAAACGCCTCCAACAACAAC
AGCTGCGAGGCGGTTAACAACAACCACAATGGCCAGAACCAGAGCCAAAA
CGGAGGCGCCTCCAATTACCAGGCCCTGCCTCTTACGCCTGCTCCGGCCA
ACACGCCACTCCACAAGGCCATCAAGCACGACCTCTTCCCGGAGGTCACC
TTCTGCAACCTCTCCGTAGAGGAGCTCGCAGATGGGGCTGGACACAGCCG
TGTGGTAAGGAGCAGTGTCATCGAACTGGAGGACGGCACCATGACGTGCC
TGATGAACGGAAATGGGCAGGTGAAGCGTCGCAAACGCCTGATCTCGAAC
GAGTCCGGCGACTCGATCGACTCCAGTTCCACGGAGAAGAAAACGCCCAA
GATGCCCGACGGTGGATATGGGTGGGTGGTGGTGTTCGCCTCTCTGGTCG
TGTCCCTTATAGCCGACGGACTGAGCTTCTCATTTGGCCTAATAAACGTG
GAACTGCTGGAATACTTCGGAGAGTCCACTTCGAAGACCGCCTGGATATC
CTCGCTATTCTTCTCCGTGCCCCTGTTGATGGGACCCATCTGGTCCAATC
TGGTGGACAAGTACGGCTGCCGAAAGATGACCATCCTCGGCGGAGTGGTC
TCTGCCTTTGGGTTTGCTCTGTCTTCGTTTTGCAACTCGATCGAGATGCT
CATGGTGACCTTTGGTATCATTTCGGGACTGGGCCTAGGCATCGGGTATG
TGACCGCGGTGGTGTCCATTGCATTCTGGTTTGACAAGAAGCGCACCTTT
GCGACCGGCATCGGAGCATCGGGCACCGGCATCGGGACCTTTGTCTACGC
CCGCCTTACTTCCTATCTAATCGAATCGTACGGCTGGCGCGGAGCCACTC
TAATCCTTGGCGGCACCATGCTCACGCATGCGTTTGCGGCGCCCTCATGC
GCGATCCCGACTGGCTGATCGAGGAAACCGTCTAGAGAGTCGATCCCAAG
CGTCACCACCTTCTCGACTCCAGTGTCTGCTGGAGGAATAAAAGCTGCTG
ACCCGCATCACATGGAGGCTGTGCTGACTCGTGGGACAGAACCACCGAAG
CACAGCAATGGCATCGTGGATCG
UFO06164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45092-RF | 5152 | CG45092-RF | 1486..2576 | 5..1082 | 5130 | 98.6 | Plus |
| CG45092-RE | 4496 | CG45092-RE | 1356..2446 | 5..1082 | 5130 | 98.6 | Plus |
| CG45092-RD | 5083 | CG45092-RD | 1943..3033 | 5..1082 | 5130 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6703368..6704397 | 1030..5 | 4950 | 99.6 | Minus |
Blast to na_te.dros performed 2014-11-28 20:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1587 | 18..107 | 126 | 60 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 677..747 | 35..108 | 111 | 63.5 | Plus |
UFO06164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:33 Download gff for
UFO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3409-RA | 1911..3020 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:46 Download gff for
UFO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3409-RA | 1938..3047 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:54 Download gff for
UFO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45092-RD | 1938..3047 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:54 Download gff for
UFO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6703293..6704398 | 1..1092 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:46 Download gff for
UFO06164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2590798..2591903 | 1..1092 | 98 | | Minus |
