UFO06166.5prime Sequence
1102 bp (1004 high quality bases) assembled on 2009-08-08
> UFO06166.5prime
CAGTCGACATGAAAAACGACGTCGTGCGATGGAGCAGGCAGCCAACTAGC
AACACCACTAACAGCAGCAGCAGCAGTAGAAGCGATAGCAACAGCACTCA
TAAGCACAGAAGCAAAAGCAACAAATTAAATGCTCGACAATTAGGGTCAA
ATGCTGCCAGAAGTTGTCAGCAAAGATCCTCTGTGGCAACAACACTAGAA
GATGAACAACAAACAATCATTGAATGTGATATAGGAAATTTCAATTTCGA
TTGCAATTTATTCAAAACTAGTTTTTTAACGCAACACAAACAGAAACGTA
GTGGCAAGAGCAGCAGCAAAAGTAAGAGCAACAGAAGTAGACCCCTAGCG
AAAACGAAAGCGGTGTTTCTATTAGCTCTGCAATTTAGTGCCGTAGTTTT
TTTATGTAATATTAATGTCGGTTTCGTGGCCGGAAGTGTGGCAACTGCGG
CATCATCGGCAGGCGGCTCATCGCCGGCAGCTCCATCATCTGCGCCCTCA
TCCCCGCCCACAGTTGCTGTACCACCGCCGCCGCCACCTTCGTCGGCACT
CAAAGTGGATCCAAATGGTCAGTCACCAGTGCTGCCGCCCTACGTTCTCG
ATTATGAGACGGGGGGCAAGGCCAAGCTAACGCCAAACAATGGCAAGTTC
GGCCAATCGGGCAGTTCCGGGAGCAATAACAACCACATCGTCGGACACTA
TACCCACACCTGGGCGGTGCACATACCAAACGGCGATAATGGCATGGCCG
ATGCGGTTGCCAAGGATCACGGATTCGTCAATTTGGGCAAGATCTTCGAT
GATCACTACCACTTCGCACATCACAAGGTCTCGAAGCGGTCGCTCTCCCC
CGCCACGCATCACCAGACTCGCCTGATGACGACGATCGCGTCCACTGGGC
GAGCAGCAGCGGGCCAAGTCGCGATCCAAACGGGACTTTATCCGCATGCG
ACCCTCAGACTCTCGCGAGCCATGTCGATGTGACGCATGTCTTTACGACT
CCAGTGCCGCAGATGTGTTTCTGATCGTGGTGGTGGCTGAAATGATGTGA
TCCGGCTGAGATGCTAACGCAAGGGCGGTGTGAATTCGATATGCCTGGAT
CG
UFO06166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fur1-RJ | 5346 | CG10772-RJ | 738..1781 | 9..1037 | 4840 | 98.5 | Plus |
| Fur1-RI | 6225 | CG10772-RI | 738..1781 | 9..1037 | 4840 | 98.5 | Plus |
| Fur1-RH | 3735 | CG10772-RH | 738..1781 | 9..1037 | 4840 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25396712..25397494 | 791..9 | 3915 | 100 | Minus |
| 3R | 32079331 | 3R | 25357949..25358118 | 957..790 | 750 | 98.8 | Minus |
Blast to na_te.dros performed 2014-11-28 18:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6506..6817 | 32..340 | 156 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6853 | 282..363 | 146 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6663..6786 | 212..339 | 126 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6840 | 281..339 | 119 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6765 | 281..339 | 115 | 66.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3337 | 304..350 | 111 | 72.9 | Plus |
UFO06166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:32 Download gff for
UFO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fur1-RE | 732..1796 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:19 Download gff for
UFO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fur1-RH | 734..1798 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:18 Download gff for
UFO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fur1-RH | 734..1798 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:18 Download gff for
UFO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25357871..25358116 | 792..1023 | 93 | <- | Minus |
| 3R | 25396712..25397498 | 1..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:19 Download gff for
UFO06166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21183593..21183838 | 792..1023 | 93 | <- | Minus |
| arm_3R | 21222434..21223220 | 1..791 | 99 | | Minus |
