UFO06167.5prime Sequence
1120 bp (983 high quality bases) assembled on 2009-08-08
> UFO06167.5prime
CAGTCGACATGCACTGCGGCAACATGCTGCTGGGCGTTGGCCTCATGTTC
CTGGCGCTATATGTCCCCTGCGCCGAATCCAAAAAGGAGCACGAGTGCAC
CAGCATCGACATCCGAAACGAGTGCAAGAACATGCATCTGCTGGACAACT
GCACCGTTGTCACCGGATACGTGATGATCACGCTGATCACTATCGAGCAG
CGCTGCAATTTCTCGGAGTACTCGTACCCACTGCTCACCGAAATCACCGA
GTTCATGATCTTCACCGACGTGCGCGGCCTGGTCAACATCACCGAAATGT
TCCCGCACCTGACCGTCATTCGGGGTCGCCGGCTGTTCCTTAACTACGCG
CTCGGAGTGACCAACATGCACGAGCTGGAACAGTTGGTATTTCCCAAATT
GGTGGCAATACAACGAGGACAAGTCTACATCGGCAGCTGCCCCAAGCTCT
GCAGCATCGGCCGTGTTAATTGGGATCTGCTGACTCTCACCAGAGGCGAG
AACAACATAATAATGGTGAATAAAAACTGCAGCACACCGGTTTGCTCTGG
ATGCAGTTCCTCCCACTGCTGGTCGAATCATTACTGCCAAAGATCCATCA
ACGAAAATGTCGCCAATCCAAAGGCCAACATAAACGCCTGCCATGAGGAG
TGCTTGGGCGGCTGCAAGAACAACTCATCATCCCCAGCTGACTGCAGCGT
TTGCCGCGGACTCAGTGATGATGGTGTCTGCGTGAAGAGCTGTCCGAAGG
ACAAGTACGTCATGGAGAACTATCAGCGCTGCTATACTGAGGCCGAGTGT
GTGCTAAAGCACGGCTATGTTATTTCCGGATCACAGTGCGTAGCTTTCTG
TCCCAGCGGCTACAAGACGAACAACCGGTCGGAGTGCGTGCTCTGTAGCC
CCGATGAGGCTTGTATCAGCTTCTGCACGCCGGAGTGCCAGGAAAAGCGT
TCACCGTATACAATCTGGCTGATGCAGAAGAATTTGCGTGGCTGTAGATC
TTCAATGGCAGCCTGGTCATCACATCCGCCAACAAGGTGACGAGACGCAG
CTGTACCACAGCTCACTAGTATGCCCGAGACTGCATGTTAAGGTCTATCG
GTCCTCCCAGCTAGAAGCCT
UFO06167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10702-RD | 4041 | CG10702-RD | 729..1849 | 7..1118 | 5210 | 98.1 | Plus |
| CG10702-RC | 3893 | CG10702-RC | 1021..2141 | 7..1118 | 5210 | 98.1 | Plus |
| CG10702-RA | 3934 | CG10702-RA | 1062..2182 | 7..1118 | 5210 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19068203..19068579 | 383..7 | 1885 | 100 | Minus |
| 2L | 23513712 | 2L | 19067190..19067521 | 1079..751 | 1280 | 95.8 | Minus |
| 2L | 23513712 | 2L | 19067782..19068026 | 625..381 | 1225 | 100 | Minus |
| 2L | 23513712 | 2L | 19067570..19067700 | 756..626 | 655 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 1196..1225 | 82..111 | 114 | 86.7 | Plus |
UFO06167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:31 Download gff for
UFO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10702-RC | 989..2117 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:16 Download gff for
UFO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10702-RA | 1055..2183 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:07 Download gff for
UFO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10702-RA | 1055..2183 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:07 Download gff for
UFO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19067164..19067517 | 755..1100 | 94 | <- | Minus |
| 2L | 19067572..19067700 | 626..754 | 100 | <- | Minus |
| 2L | 19067782..19068023 | 384..625 | 100 | <- | Minus |
| 2L | 19068203..19068581 | 1..383 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:16 Download gff for
UFO06167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19067164..19067517 | 755..1100 | 94 | <- | Minus |
| arm_2L | 19067572..19067700 | 626..754 | 100 | <- | Minus |
| arm_2L | 19067782..19068023 | 384..625 | 100 | <- | Minus |
| arm_2L | 19068203..19068581 | 1..383 | 98 | | Minus |
