UFO06171.5prime Sequence
1105 bp (999 high quality bases) assembled on 2009-08-08
> UFO06171.5prime
CAGTCGACATGATGATGATGGACACCATGGACACCTCGCAATCGCAGCCG
ATGGACGTGGCTCCGGCCGTAGCAGTGGCAGCCACTTCGGGCGCAGCTCT
GGTGGACTTTACCGCTGCCATGGTGAGCATGGCGGCCACCGCCGAGGCTG
AGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGTACAAGGAG
CACCGCAAGAACAAAAAAAAGAAACGCGAGAAGCGGGAGCGCGAGGGCAA
GGAGCACCGGCATCACAAACACCGTGACCGGGAGCATCGCGAGCATCGAC
GACATCGCGACCGGGATCGGGACAAGGAGCGGGATCGGGAGGGACATCAC
CACCATCCAACGCACCACCACCCCAACAACAGCCAGCACTCGACCTCCGC
CTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGACCATCGAAT
ACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTGGTGGAGCG
ACAGGGACGGGTGCAGCCGTAGGAGCCACCACCACATATCCGCACAACTT
AAAAATACGCTTCCTGCTTTCCGGGCAACGTACCGAACTCAGCCCGCCGA
CCCACCAAACATCCGCAACCGCCGAAGTAAATGCACCGCTGGCCAGCTCG
ACGAGTGCATCCATTGCGGTAACTGCGAGTGCGACGGCGGCATCAGCCCC
TCCAGCAACGGGCACCACTACCTTAGGCAGCAGCATTAGCGGCAATGCTG
GCTCAACCTCCAGCGGTAACAGTTCCGGAGTATCGGCGACTGGAGGAGCA
CAATCCGCCGTGGGGTCTGGCGGCTATCCAAAGACAGAATCGAGCAAGTC
GAGTGGCACCGCAAGCGCACGCAGTGACAGTGGCAGCAGCAGCAATACAA
GTAGCACCAAGCACGGCAGCAACATCAAGGATATTAGCAGCAGTAGCAAT
CAGCAGGCATCGACTGCGAGCAGCAGTAGTGCACCCAGCCTTTATGTCCT
CCGTGCCACTGTCCACGGCCAACGTACCTGGGAATCAATCTGCCCCACCA
GCAGCACTAGCAGTAGTAACCACCAGCGATCCCATCCGCATCGTCGCGCA
GAATG
UFO06171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alh-RO | 5324 | CG1070-RO | 781..1871 | 9..1101 | 5280 | 99.2 | Plus |
| Alh-RN | 5100 | CG1070-RN | 781..1871 | 9..1101 | 5280 | 99.2 | Plus |
| Alh-RM | 5196 | CG1070-RM | 781..1871 | 9..1101 | 5280 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7107078..7107644 | 575..9 | 2835 | 100 | Minus |
| 3R | 32079331 | 3R | 7101608..7102098 | 1068..575 | 2290 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 20:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6943 | 756..976 | 201 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2200..2420 | 733..949 | 186 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2807 | 608..1075 | 181 | 53.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2816..2940 | 858..977 | 153 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6885 | 884..978 | 153 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6900 | 835..955 | 149 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6840 | 884..978 | 147 | 68.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1164 | 858..965 | 138 | 64.9 | Plus |
UFO06171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:38 Download gff for
UFO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alh-RE | 766..1867 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:51 Download gff for
UFO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alh-RM | 773..1874 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:02 Download gff for
UFO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alh-RM | 773..1874 | 1..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:02 Download gff for
UFO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7101599..7102097 | 576..1078 | 98 | <- | Minus |
| 3R | 7107078..7107652 | 1..575 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:51 Download gff for
UFO06171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2927321..2927819 | 576..1078 | 98 | <- | Minus |
| arm_3R | 2932800..2933374 | 1..575 | 99 | | Minus |
