UFO06174.5prime Sequence
1123 bp (1003 high quality bases) assembled on 2009-08-08
> UFO06174.5prime
CAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCGCTGGTTTC
AATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGAGGCTTCAA
GCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCATCATCTACA
AGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGGGACCCATT
GTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAAAACATATA
CTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTACGGATCTCA
TCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTGAGGTGCGC
GTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGCTACCAGGG
TCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGACTGGACCCC
ACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGCCGTACGCC
ACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAAAGTCGCTG
GAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCGCGATGCCA
TCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACATCGATCTG
TGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTATGAGCTGGC
TAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTCAAGACCGGAACCT
CAACCGTGCTGCACACCAACATTAAGGACCTACTCGTCACCGAACGCGTC
CAGGCGGTGCCCATGGAGATTTCTGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATATCATAATCATAATCATAATCATAA
TCACACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGATCTCACAAT
AAAACGCCCGGCGGCACGAGCGTCTGAACAATCCAGATGGAGTTCTGAGG
TCATACTGAATCTATCACAGGAGTCAAGCGAGCTCGATATCAGTACGCCC
GCCTGCCACTCATCGCAGTACTGTGTATCATAGCATTCTGGGCGACTGGA
GCATTCGACGCATGATGACCTGA
UFO06174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2-RA | 1034 | CG3329-RA | 118..933 | 9..824 | 4080 | 100 | Plus |
| Prosbeta2R1-RA | 1077 | CG18341-RA | 171..363 | 100..292 | 335 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15000645..15001218 | 251..824 | 2870 | 100 | Plus |
| 3L | 28110227 | 3L | 15000199..15000379 | 70..250 | 905 | 100 | Plus |
| 3L | 28110227 | 3L | 15000068..15000129 | 9..70 | 310 | 100 | Plus |
| X | 23542271 | X | 5809181..5809299 | 100..218 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:39:25 has no hits.
UFO06174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:29 Download gff for
UFO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2-RA | 113..939 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:11 Download gff for
UFO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2-RA | 118..944 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:45 Download gff for
UFO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2-RA | 118..944 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:45 Download gff for
UFO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15000068..15000129 | 9..70 | 100 | -> | Plus |
| 3L | 15000200..15000379 | 71..250 | 100 | -> | Plus |
| 3L | 15000645..15001229 | 251..834 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:11 Download gff for
UFO06174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14993168..14993229 | 9..70 | 100 | -> | Plus |
| arm_3L | 14993300..14993479 | 71..250 | 100 | -> | Plus |
| arm_3L | 14993745..14994329 | 251..834 | 99 | == | Plus |
