UFO06176.5prime Sequence
1123 bp (1018 high quality bases) assembled on 2009-08-08
> UFO06176.5prime
CAGTCGACATGATCAAGGGCATTCTGATACAGCGCAAGAGCCAGGAGGAT
GCCAGCTACACCAAGCAGCTCAAGATGGAGCACGCCGATCTGGTGGCCGA
GATGCAGACCGTGGAGAGCCTGCCCACCCACGAGCGACTCCAGCTGGCCA
GACTACGTCGTGCGCAGCAGCTGAAGCTGTCCCGCCAGAAGGACAAGGAG
TGGGCCAAGTTGCAGCGGGCGAAGGGCAACACGGCGAGCGGCGGCAGCGG
AACCGGATCGCTGGGCAACGGGCTGATGAACGGCAACGGAGATACCACGC
ACCACTTCCGGCACGCCAATGGTTCGGGCACGTTGAGCGGCAGGCGGCAC
ATATCCTTCGAGAACAGCGTGGTGCTCCTGGAGGCGGCATCCCGGAACGA
CATGCCCGAGGTGGCCGCCCTGCTGCAGCACGGAATCACGCCGGATGCCG
CAAACGAGGATGGACTGACGGCGATGCATCAGGCGTGCATCGATAACAAC
GTCGAGATGCTGCAGCTGCTGCTGGAGTACGGTGCGAATGTGGATGCGCA
GGACAGTGATAAGTGGACGCCGCTTCATGCGGCTGCCACCTGCGGCCACC
TCGAGCTCGTCCGCATCCTCATCCGGCACGGCGCCAATCTGCTGGCCGTC
AACACCGACGGCAACATGCCCTACGACCTGTGCGACGATGAGAAAACCTT
GGACTTCATCGAGGGCGAGATGGCTCAACGGGGCGTGACCCAGGAGCTCA
TCGACGAGACGCGCTCCTCCACGGAGCGGATTATGCTGCGCGACCTAATG
GAGTTGGCGCGCACAGGAGGAGATTTGGAGGAGCCGGACTACCAGTGTGC
AACGCCGCTTCACATAGCTGCTGCGAATGGATACGTCCGCGTTGTGAGTT
TTGTTGGAGCAGCATGTCAACGTGATGCCATGGACAGATCTGTGGACACC
GGTGCATGCCGCCGCTTGTGGGGTCATCTGAGGTGCTGGAGATGCTGGCC
CAGTGTGGTGCTGATCTGATGTCGCACAGACGACGAGACCTCCTCGACTT
CTGGAGATCCCGAATCAGGGAACGAATCGAACAGCTGAGACGGACAGAGC
TAGACTGCCTAGCACGGCACTAC
UFO06176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MYPT-75D-RD | 4016 | CG6896-RD | 866..1970 | 7..1094 | 5045 | 98.1 | Plus |
| MYPT-75D-RC | 4663 | CG6896-RC | 1513..2617 | 7..1094 | 5045 | 98.1 | Plus |
| MYPT-75D-RB | 3872 | CG6896-RB | 1040..2144 | 7..1094 | 5045 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18662624..18663326 | 155..857 | 3515 | 100 | Plus |
| 3L | 28110227 | 3L | 18661896..18662043 | 7..154 | 740 | 100 | Plus |
| 3L | 28110227 | 3L | 18663491..18663612 | 857..973 | 385 | 93.4 | Plus |
| 3L | 28110227 | 3L | 18663681..18663721 | 979..1019 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:13 has no hits.
UFO06176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:28 Download gff for
UFO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MYPT-75D-RA | 816..1935 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:43 Download gff for
UFO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MYPT-75D-RB | 1033..2152 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:52 Download gff for
UFO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MYPT-75D-RB | 1033..2152 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:52 Download gff for
UFO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18661889..18662043 | 1..154 | 98 | -> | Plus |
| 3L | 18662624..18663326 | 155..857 | 100 | -> | Plus |
| 3L | 18663492..18663617 | 858..977 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:43 Download gff for
UFO06176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18654989..18655143 | 1..154 | 98 | -> | Plus |
| arm_3L | 18655724..18656426 | 155..857 | 100 | -> | Plus |
| arm_3L | 18656592..18656717 | 858..977 | 95 | -> | Plus |
