UFO06177.5prime Sequence
1121 bp (1022 high quality bases) assembled on 2009-08-08
> UFO06177.5prime
CAGTCGACATGCGTTTCTGCTTTGATCGGCTGTGCTTCGCAACCAAGCGG
CCAGCCCAAAACTCCAACAGCAATGCACCACACAGCAGCACCACAGTAGA
TGCACCACCACGTCCAGCGGATGTAGATGTAGCCACTGTACCAGTAGCAA
CACCAGCACCACCACCACAACAGCCAGTTAGTAATCTGTTCTATGCCGAC
TACCAGAAGCTGCAGCCGGCGATAATCGATCGGGACTGGGAGCGGGACAG
AGATACAGATACAGATACCAGGAGCGAGGCCAAGCCACCGGACATTGTGG
AGCACATAGAACCCGTAGAGGAGCAGAGACAGATACACACACAGATACAG
TCGCCGGCAGAGATACAGATACAGATACCCCCGACGCCCCCTGCCCCATC
GATACAGATACAGATACAGCAGCGCTATCGCCGGCACAGCAGTGCCGAAG
ATCGCAATCTGAACACGAGGCGAAACGATTCGAATATTACGGAGGCGTTA
CGAAAAGCAGCCAGTATGCAGCAGGAGCCGAACGCCAACTATCAGTTCCC
AACCGACTTGGGTCTGGTGAGCATCGTCAACAATAATAATAACACAAACA
CCCATCCGAGTGGATCCAATAGCGGCAGCAACAACAACAGCAATATCAAC
AATAATCTGGTGGGTGGCATTGTGACCTTGCCGGCGGCTGGTGGTCTCAT
AGGTCTGGAGCATACGGCGTCGGGTCTGCGACTGATACCAGCACCGCCTA
CCCACTCGGATGTGCTGACCCACACGCTGATCTATGGCACACCGCCCTCG
GGCGCCCAGCAATTGAACCAGGATCCCCGAAGCCTTCTGCACCAACAGGA
GCTGCAGCTACAGCAGCGCTATCAGCAATTGCAGCAGCTTCACGCGCAGA
CGCACGTCTGTACACCAGCCAAGGAAGTCCGGTGCTGTATCACCAACCCA
GTCCGGGATCGAGTCAACCGGTGGCATACCCGGAGCCACTTGTCATTCGT
CCACGCAACTGCAGCCGCCCAACACGCTGACTGCAGCACAAATGCTAGTC
TGCGATTCTCGGATGCCGCCACCGGTACGGGGGTCGCCACCCCCTCCGGT
GGCTGGGTGATCGAATCTATT
UFO06177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| for-RA | 4595 | CG10033-RA | 625..1706 | 9..1081 | 5045 | 98.2 | Plus |
| for-RI | 4581 | CG10033-RI | 611..1692 | 9..1081 | 5045 | 98.2 | Plus |
| for-RH | 4316 | CG10033-RH | 346..1427 | 9..1081 | 5045 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3639432..3640455 | 1030..9 | 4945 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 22:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6886 | 46..176 | 179 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1139 | 90..174 | 154 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2667 | 542..653 | 148 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2440 | 570..651 | 140 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6861 | 570..651 | 140 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2413 | 570..651 | 138 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2925 | 815..947 | 135 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2410..2492 | 570..655 | 125 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6909 | 569..651 | 120 | 62.7 | Plus |
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1218..1259 | 135..176 | 120 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2429 | 617..655 | 114 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6754 | 619..655 | 113 | 78.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1068..1147 | 570..655 | 110 | 62.8 | Plus |
UFO06177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:27 Download gff for
UFO06177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RA | 623..1666 | 9..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:04 Download gff for
UFO06177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RH | 346..1389 | 9..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:30 Download gff for
UFO06177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RH | 346..1389 | 9..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:30 Download gff for
UFO06177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3639432..3640455 | 9..1030 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:04 Download gff for
UFO06177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3639432..3640455 | 9..1030 | 99 | | Minus |
