UFO06178.5prime Sequence
1076 bp (988 high quality bases) assembled on 2009-08-08
> UFO06178.5prime
CAGTCGACATGGCCGTTTTCCTGATCAACGTCTGCAAGTACAATGGCTGC
GGCATCACGTTTCCGAGCTTGAGCGATCTGATTTCCCACATCGAGGACAC
CCACATAGACTATGACCCAAAGGTGGTCGAACAGAAGGAGCAGGCCCAGC
CTGCCTGCCTGCCCTTAAGTTATGTCCTGCGCTTCATCACCGAGGAGAAC
CGCAAGGAGGCGGGCTCGTTCCTGGCCAGCAACACAACAGCCCCACCGAC
CACCAATAGCGGATCCAATGCAGCTGGCCACGGGAATGGCAATGTGGAGC
TCAAGCGAAAGCTGGCCATCAAGCACCACAGTTACAGTATGTCCTCGTCC
AACCGCAGCACCACGCCAACAGGCAGCGAAATGGACGAGGACGAAATGGT
GGTCACGGAGTCGGAGGATAGCAACGACTCCTGGACCACCGAGGAGTTTA
GCTCGGAGTTTATCATGCGCTACGGCAGCAGGCATTCCGGTGGTGGAAGC
AATGGCACGCCCGGCAATGAGAAACCCTTCGCCTGCCCTGTTCCGGGATG
CAAAAAGCGTTACAAGAACGTCAACGGCATCAAGTACCATTCGAAGAACG
GTCACAAAAAGGACGGAAGAGTGCGCAAGGGCTACAAGTGTCACTGCGGC
AAGAGTTACAAAACGGCCCAGGGCCTGAAGAACCACGCGCTGCACACACA
CAACTCGCAGCCGGATAGTGTGCTGAATGCCCAGCTGGCCAATGCGTTGG
CCATAGGCGATGGGGCCAGTGCGGCCACGCCTGTGGGCAGCAGCAACACC
TCCTCCAATCCGAACCCGCCGCCCATCATTCAGCGCAGCAACTCGCCGTC
TCAGTCGCTGGGCTCGTTGAGTCCGTCGAGCATCAGCAACATGTCGAGCA
GCGCCAGCAGTTGCCATGAGCAGCGCAGTCTGTCGAACGGGATATGCAAC
ATGGGAGCACTACTAGCACACTGCATCTCACTAGCACGGGATGTCTGCAG
CAGCTCATGCAGGATGTGTCACCTGACAATCTCCAGCACAGCATCAGCAG
CAACAGCGAGCGTACGCACGAGCAGC
UFO06178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12054-RF | 2408 | CG12054-RF | 595..1666 | 9..1057 | 4790 | 97.8 | Plus |
CG12054-RE | 4280 | CG12054-RE | 595..1666 | 9..1057 | 4790 | 97.8 | Plus |
CG12054-RA | 3130 | CG12054-RA | 595..1666 | 9..1057 | 4790 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31226565..31226892 | 618..942 | 1510 | 98.8 | Plus |
3R | 32079331 | 3R | 31225811..31226077 | 107..373 | 1335 | 100 | Plus |
3R | 32079331 | 3R | 31226364..31226503 | 480..619 | 700 | 100 | Plus |
3R | 32079331 | 3R | 31226139..31226250 | 371..482 | 560 | 100 | Plus |
3R | 32079331 | 3R | 31221366..31221465 | 9..108 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:32 has no hits.
UFO06178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:26 Download gff for
UFO06178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 593..1667 | 9..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:55 Download gff for
UFO06178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 595..1669 | 9..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:39 Download gff for
UFO06178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12054-RA | 595..1669 | 9..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:39 Download gff for
UFO06178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31221366..31221465 | 9..108 | 100 | -> | Plus |
3R | 31225813..31226076 | 109..372 | 100 | -> | Plus |
3R | 31226141..31226249 | 373..481 | 100 | -> | Plus |
3R | 31226366..31226503 | 482..619 | 100 | -> | Plus |
3R | 31226567..31227030 | 620..1061 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:55 Download gff for
UFO06178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27047088..27047187 | 9..108 | 100 | -> | Plus |
arm_3R | 27051535..27051798 | 109..372 | 100 | -> | Plus |
arm_3R | 27051863..27051971 | 373..481 | 100 | -> | Plus |
arm_3R | 27052088..27052225 | 482..619 | 100 | -> | Plus |
arm_3R | 27052289..27052752 | 620..1061 | 94 | | Plus |