Clone UFO06178 Report

Search the DGRC for UFO06178

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:61
Well:78
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG12054-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06178.5prime Sequence

1076 bp (988 high quality bases) assembled on 2009-08-08

> UFO06178.5prime
CAGTCGACATGGCCGTTTTCCTGATCAACGTCTGCAAGTACAATGGCTGC
GGCATCACGTTTCCGAGCTTGAGCGATCTGATTTCCCACATCGAGGACAC
CCACATAGACTATGACCCAAAGGTGGTCGAACAGAAGGAGCAGGCCCAGC
CTGCCTGCCTGCCCTTAAGTTATGTCCTGCGCTTCATCACCGAGGAGAAC
CGCAAGGAGGCGGGCTCGTTCCTGGCCAGCAACACAACAGCCCCACCGAC
CACCAATAGCGGATCCAATGCAGCTGGCCACGGGAATGGCAATGTGGAGC
TCAAGCGAAAGCTGGCCATCAAGCACCACAGTTACAGTATGTCCTCGTCC
AACCGCAGCACCACGCCAACAGGCAGCGAAATGGACGAGGACGAAATGGT
GGTCACGGAGTCGGAGGATAGCAACGACTCCTGGACCACCGAGGAGTTTA
GCTCGGAGTTTATCATGCGCTACGGCAGCAGGCATTCCGGTGGTGGAAGC
AATGGCACGCCCGGCAATGAGAAACCCTTCGCCTGCCCTGTTCCGGGATG
CAAAAAGCGTTACAAGAACGTCAACGGCATCAAGTACCATTCGAAGAACG
GTCACAAAAAGGACGGAAGAGTGCGCAAGGGCTACAAGTGTCACTGCGGC
AAGAGTTACAAAACGGCCCAGGGCCTGAAGAACCACGCGCTGCACACACA
CAACTCGCAGCCGGATAGTGTGCTGAATGCCCAGCTGGCCAATGCGTTGG
CCATAGGCGATGGGGCCAGTGCGGCCACGCCTGTGGGCAGCAGCAACACC
TCCTCCAATCCGAACCCGCCGCCCATCATTCAGCGCAGCAACTCGCCGTC
TCAGTCGCTGGGCTCGTTGAGTCCGTCGAGCATCAGCAACATGTCGAGCA
GCGCCAGCAGTTGCCATGAGCAGCGCAGTCTGTCGAACGGGATATGCAAC
ATGGGAGCACTACTAGCACACTGCATCTCACTAGCACGGGATGTCTGCAG
CAGCTCATGCAGGATGTGTCACCTGACAATCTCCAGCACAGCATCAGCAG
CAACAGCGAGCGTACGCACGAGCAGC

UFO06178.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RF 2408 CG12054-RF 595..1666 9..1057 4790 97.8 Plus
CG12054-RE 4280 CG12054-RE 595..1666 9..1057 4790 97.8 Plus
CG12054-RA 3130 CG12054-RA 595..1666 9..1057 4790 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31226565..31226892 618..942 1510 98.8 Plus
3R 32079331 3R 31225811..31226077 107..373 1335 100 Plus
3R 32079331 3R 31226364..31226503 480..619 700 100 Plus
3R 32079331 3R 31226139..31226250 371..482 560 100 Plus
3R 32079331 3R 31221366..31221465 9..108 500 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:21:32 has no hits.

UFO06178.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:26 Download gff for UFO06178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 593..1667 9..1061 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:55 Download gff for UFO06178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..1669 9..1061 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:39 Download gff for UFO06178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12054-RA 595..1669 9..1061 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:39 Download gff for UFO06178.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31221366..31221465 9..108 100 -> Plus
3R 31225813..31226076 109..372 100 -> Plus
3R 31226141..31226249 373..481 100 -> Plus
3R 31226366..31226503 482..619 100 -> Plus
3R 31226567..31227030 620..1061 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:55 Download gff for UFO06178.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27047088..27047187 9..108 100 -> Plus
arm_3R 27051535..27051798 109..372 100 -> Plus
arm_3R 27051863..27051971 373..481 100 -> Plus
arm_3R 27052088..27052225 482..619 100 -> Plus
arm_3R 27052289..27052752 620..1061 94   Plus