UFO06179.5prime Sequence
1051 bp (949 high quality bases) assembled on 2009-08-08
> UFO06179.5prime
CAGTCGACATGAACGAGACCTTAAAGCTGTCCGGACTCGGAATGCAGCGC
ACCAATATCGAGCTCGAGCGGCAGAGGCACCTGGCCAACTGGCTGATGAA
CAGTAGACCGCACATGCCCGGCGGACCAGCAGCAGCAACAACAACATCAG
CGGCAGCAGCAACAACACCCACTGCATCAGCCACAAAGGGCGCAACAACA
ACAACAGCTACAACTACAAATCCTGGCTCCACAGTGGGTGGAGCAGGCGC
TGGCCCAGTGGGCGGCAACGGGGTCGCAACAGCAGCAGCAGCGGGCGCAC
CCAGCAACAGCGTCGCAGCTGCAGCAGCAGCTGCATGTAACGGTGGAGCA
GCCGTTGGCGCCCATCACGGCCACCATTCGGCGGCTGGGGCGCGCAAGCC
CAAACTGCGGCGCTTCAACTCCCACGACACCAGTTCGAATATGTTCTCGG
TGGCCGATTTCGAGAACGCCCGCCTAGCTCGCCGCAACGAGATCGAGCTG
AACCAGCGGAGGGCACGACGCGTGCGCGGCAGTGCCAACAACAGCACCTA
CGGCCTGGGATCGGGCTCAGGATTGCTGGGAGGTGCCCATTCTGGATACT
GTGACGCACTCAATGGCAGCGGCGATTACTCCACCGGGGACAGCAAGGCC
TCCAAGGGCAGCAGCGAAGGTGCGCTGACAGCCATTGAGTTCCTTGAGCG
GAATTCCCTGCCACGAGTCGTCCGCATTCTGCATGCGAGCAAGAGCTCAA
ACGAAACGCTGCAGTCCAGCTCATCGCATGGCTCCTCCACGGCGGCATCG
AGCAGCTCCTCGACGGAGCGAATCCGTTTGGTTCTGGTGGCAGTGGTGGT
GGAAACATTTCCAGTGGCACATTGACACCGGCACCCATTCATCGTCAGCG
AGCAGCGCCACCGAAACGACTGGCTCTGTTCTGTCTAGTCGGCTCGGTCT
GTCTGTCTGTCACAAACAACACGTCGCACAGCAGCACGTGCACTCCACCC
GCACGATGACTTTTCTGCTCTAGCTGGTGCACGGCACATTACAGGACCAG
C
UFO06179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B4-RC | 8094 | CG9239-RC | 891..1936 | 9..1022 | 4465 | 96.8 | Plus |
| B4-RB | 5743 | CG9239-RB | 572..1617 | 9..1022 | 4465 | 96.8 | Plus |
| B4-RA | 5920 | CG9239-RA | 749..1794 | 9..1022 | 4465 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13512958..13513293 | 344..9 | 1680 | 100 | Minus |
| 2L | 23513712 | 2L | 13509466..13509793 | 669..342 | 1640 | 100 | Minus |
| 2L | 23513712 | 2L | 13508875..13509104 | 896..669 | 1050 | 99.1 | Minus |
| X | 23542271 | X | 13649985..13650039 | 127..181 | 185 | 89.1 | Plus |
Blast to na_te.dros performed 2014-11-28 20:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6944 | 125..331 | 321 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6945 | 128..353 | 320 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2516 | 127..339 | 283 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2673 | 128..349 | 277 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2554 | 49..340 | 264 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2539 | 125..335 | 259 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6917 | 125..292 | 256 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6917 | 154..352 | 250 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 123..218 | 246 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2494 | 45..218 | 238 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2476..2661 | 125..311 | 229 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2954 | 61..234 | 226 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6895 | 45..219 | 224 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6861 | 125..218 | 223 | 73.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6937 | 128..234 | 220 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 133..220 | 219 | 75.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2476 | 125..218 | 218 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2474 | 123..219 | 215 | 69.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1174 | 123..222 | 212 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1613 | 130..206 | 200 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2971 | 125..326 | 195 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2608..2849 | 125..354 | 184 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..6923 | 125..202 | 183 | 70.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1163 | 123..178 | 172 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2982 | 127..311 | 170 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2910..2997 | 127..214 | 162 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1135 | 131..219 | 161 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2500..2546 | 125..171 | 154 | 80.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 117..156 | 125..164 | 146 | 85 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11295..11334 | 125..164 | 146 | 85 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1600 | 125..172 | 145 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6877..6923 | 123..169 | 145 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2836 | 129..218 | 144 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2853 | 125..352 | 142 | 55.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6050..6094 | 121..164 | 141 | 82.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 50..213 | 27..185 | 139 | 60.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9080..9243 | 27..185 | 139 | 60.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7942..8018 | 132..205 | 135 | 66.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7505..7546 | 121..161 | 135 | 83.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9386..9462 | 132..205 | 135 | 66.2 | Plus |
| BS | 5142 | BS BS 5142bp | 2015..2091 | 154..231 | 135 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2879..2966 | 135..225 | 132 | 63.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1022 | 131..183 | 130 | 71.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 910..942 | 130..162 | 129 | 87.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12088..12120 | 130..162 | 129 | 87.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7384..7458 | 109..181 | 127 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5619..5681 | 160..225 | 125 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6905..6999 | 127..218 | 125 | 62.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..196 | 131..207 | 123 | 65.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9226 | 131..207 | 123 | 65.4 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 484..586 | 134..233 | 121 | 59.2 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 137..214 | 120 | 61.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6598..6671 | 125..201 | 116 | 68.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8054..8127 | 125..201 | 116 | 68.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8870..8910 | 141..181 | 115 | 75.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7959..8020 | 125..183 | 114 | 67.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9403..9464 | 125..183 | 114 | 67.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 530..575 | 123..168 | 113 | 71.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1007..1163 | 7..154 | 112 | 58.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8621..8681 | 123..181 | 112 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2478 | 125..148 | 111 | 95.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3588..3625 | 184..221 | 109 | 76.3 | Plus |
UFO06179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:25 Download gff for
UFO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RB | 567..1461 | 5..896 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:35 Download gff for
UFO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 744..1638 | 5..896 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:41 Download gff for
UFO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B4-RA | 744..1638 | 5..896 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:41 Download gff for
UFO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13509467..13509792 | 343..668 | 100 | <- | Minus |
| 2L | 13512960..13513298 | 5..342 | 99 | | Minus |
| 2L | 13508875..13509104 | 669..896 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:35 Download gff for
UFO06179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13508875..13509104 | 669..896 | 99 | <- | Minus |
| arm_2L | 13509467..13509792 | 343..668 | 100 | <- | Minus |
| arm_2L | 13512960..13513298 | 5..342 | 99 | | Minus |
