UFO06181.5prime Sequence
1105 bp (990 high quality bases) assembled on 2009-08-08
> UFO06181.5prime
CAGTCGACATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGGATGCCGCC
GACCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGCAACTCCAG
CGTGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAGCTTCACAT
CCGCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGACCGTATTT
CGGCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCTGGACAGGA
GCGGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGATGGGTTTCA
TCCTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGGTTCAGGAT
TGGGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAGGTGATCCT
GGTGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAGCTTCGAAC
GTGGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCGAGACCTCT
GCCAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTGGTGGACAT
CATCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGACGTTAGTAG
GCGGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGGGCACGCCT
AATGCCAACTGCAATTGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCGTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTGTAATTCATTAAGC
ATTCTGCGACATGAAGCCATCACAAACGCATGATGAACTGATCGCAGCGC
ATCAGCACTGTCGCTGCTATAATATTTGCCCATGTTGAAACGGGCGAGAG
TGGTCATATTGCCCAGTCATCAACTGGGACTCACAGGATGCTGAACCAAA
CTATT
UFO06181.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab3-RA | 3757 | CG7576-RA | 620..1279 | 9..668 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10724805..10725030 | 234..9 | 1130 | 100 | Minus |
| 2R | 25286936 | 2R | 10724013..10724186 | 525..352 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 10723813..10723958 | 668..523 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 10724248..10724368 | 353..233 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:33 has no hits.
UFO06181.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:24 Download gff for
UFO06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab3-RA | 607..1274 | 9..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:05 Download gff for
UFO06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab3-RA | 620..1287 | 9..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:00 Download gff for
UFO06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab3-RA | 620..1287 | 9..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:00 Download gff for
UFO06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10723805..10723956 | 525..676 | 97 | <- | Minus |
| 2R | 10724014..10724185 | 353..524 | 100 | <- | Minus |
| 2R | 10724249..10724367 | 234..352 | 100 | <- | Minus |
| 2R | 10724806..10725030 | 9..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:05 Download gff for
UFO06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6611310..6611461 | 525..676 | 97 | <- | Minus |
| arm_2R | 6611519..6611690 | 353..524 | 100 | <- | Minus |
| arm_2R | 6611754..6611872 | 234..352 | 100 | <- | Minus |
| arm_2R | 6612311..6612535 | 9..233 | 100 | | Minus |
