UFO06184.5prime Sequence
1087 bp (847 high quality bases) assembled on 2009-08-08
> UFO06184.5prime
CAGTCGACATGACCCTCTTGCCAGACATCAAGGCATCGGATGCCGCTTGC
TGCGTGGGAGGTGCGAACAGCGATGCCAGCAGCAGTTCCGGCGTCTGCAG
CCTCAAGGGTCACCATGGTGACCCCGACAGCGGTTGCCTGGGCATCAACT
GTTGCACCACGGCGGCCAGCTCGGAGCTGTCCATCGACGAGACGTCATCG
ACCTCGTCCCGAGGCTCCTGCGAGCTGACCAGCAAGGTGACCAACGACCT
GAACGGATTCCAGAGTCCGAACTACCACCAGGCGGTGGCGCATGCCAACT
TCGACCACTGCGATCCCGTGGACATCCAGTTCGCCGACGTGCGCTACACA
GTGAAAAAGTTCTCCTTCCCGGAGCGGAAGTTCGTCACCAAGGAGATCCT
TCATGGCCTGAACGGCAGCTTCCGGTCTGGCGAACTCACAGCCATCATGG
GTCCTTCGGGCGCCGGCAAGAGCACGCTGCTGAATGTGATGTCCGGATTT
TGCTCCACTGGCGTGTCGGGCGATATCCGGGTTAATAGAAAGCCCATGGC
TCCCAGCTCCGAGAGGTTTCGCCAAATGCTGTGCTACATCCACCAGGACG
ATCTGCTGCGTCCACAGCTGTTGGTCGGCGAGTAATGCTGCTGGCGGCAC
ATCTGAAGCTGGGCTTCAGGTCACCAAGGCGTACAAATGGATCTGATCAA
ACACATCTTATCGCTGCTGGGTCTGGACATCGCTACATGTGCCACTGGGA
GCTTCGGGTGGCAGAGAGCGACTCGCATCGCCTGAGCTGATAGTATCTCC
GTGCTATATCTGGTGAGCGACGACTGCTGACAGCTCTCGTGCACTCTGCG
TGCTCTGCTGAAAACTGCTCCAGCCCCATATCTGCACATCATCAGCATGC
TGTCTCAGAGTCACAGTCAACGCTCAGCATGCTGACAGACTGGGCGATGT
GCTCTGCACACGTCGTGCCATACACACCATATTCTTGATGGCTGGCACTA
CTGACTGATGCATCTGCGCATAATTCAGATGGACCAGTATGACGGATGCC
CCTGACTAAAATGCGAGATGAACTGACTGATGGGCAT
UFO06184.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17646-RA | 3421 | CG17646-RA | 593..1475 | 7..862 | 3645 | 96.1 | Plus |
| CG17646-RB | 2999 | CG17646-RB | 171..1053 | 7..862 | 3645 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1741699..1742076 | 7..384 | 1815 | 98.7 | Plus |
| 2L | 23513712 | 2L | 1743344..1743530 | 502..686 | 820 | 98.4 | Plus |
| 2L | 23513712 | 2L | 1742142..1742260 | 384..502 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:05:27 has no hits.
UFO06184.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:29 Download gff for
UFO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17646-RA | 583..1443 | 1..836 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:42 Download gff for
UFO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17646-RB | 163..1023 | 1..836 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:36 Download gff for
UFO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17646-RB | 163..1023 | 1..836 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:36 Download gff for
UFO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1742143..1742260 | 385..502 | 100 | -> | Plus |
| 2L | 1743345..1743540 | 503..695 | 97 | -> | Plus |
| 2L | 1741691..1742076 | 1..384 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:42 Download gff for
UFO06184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1742143..1742260 | 385..502 | 100 | -> | Plus |
| arm_2L | 1741691..1742076 | 1..384 | 97 | -> | Plus |
| arm_2L | 1743345..1743540 | 503..695 | 97 | -> | Plus |
