UFO06186.5prime Sequence
1111 bp (1029 high quality bases) assembled on 2009-08-08
> UFO06186.5prime
CAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGCGGATAGTT
TGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTTGCTTTGGC
CCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAGGTGGCGCA
ATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGCTGCTGCTC
AAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAACGTTCGGA
AAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGAACA
ATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAAAGCCGCTG
GGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTGCTAAAGCA
AAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAAAAAAAGTT
TCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCGTCAAGGGA
ATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATGGGAGCACC
GGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAATAATGTAG
CACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGCTGGACATG
ACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTACAATGACTT
CTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCAGCTGAGCA
AATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGTACTACAAC
AATAATAACAATATTGTTAATAACAATAACAACTCACCGGAGCTGTACAA
GCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACCACCATATC
GTGACCCGCCACCCCCGAGAAAACAGCCCCATGTGCCAGGGGCAGCGTTT
GGCCAGCAGCAATGCGGACACCATGTCCAATGCTCTCTCGACGAATTCGT
TTCTCAGCGACTACGATCAGCATAGCAGCCACACACTATAGCATCAACAA
ATAATAGCAGGCCATGGGAGGAGGGTGAGCCATGTTCCGGAACCCCGCAG
TATAACGATGC
UFO06186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-RA | 3429 | CG5053-RA | 621..1724 | 9..1109 | 5220 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25663144..25663807 | 449..1109 | 2760 | 96.7 | Plus |
3R | 32079331 | 3R | 25662631..25663008 | 78..455 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 25662415..25662487 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 788..832 | 128 | 78.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 788..832 | 128 | 78.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 32..68 | 796..832 | 122 | 81.1 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7070..7106 | 796..832 | 122 | 81.1 | Plus |
UFO06186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:23 Download gff for
UFO06186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-RA | 608..1719 | 1..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:39 Download gff for
UFO06186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 613..1724 | 1..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:33 Download gff for
UFO06186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 613..1724 | 1..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:33 Download gff for
UFO06186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25662407..25662486 | 1..80 | 95 | -> | Plus |
3R | 25662634..25663007 | 81..454 | 100 | -> | Plus |
3R | 25663150..25663807 | 455..1111 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:39 Download gff for
UFO06186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21488129..21488208 | 1..80 | 95 | -> | Plus |
arm_3R | 21488356..21488729 | 81..454 | 100 | -> | Plus |
arm_3R | 21488872..21489529 | 455..1111 | 97 | | Plus |