Clone UFO06186 Report

Search the DGRC for UFO06186

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:61
Well:86
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRASSF8-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06186.5prime Sequence

1111 bp (1029 high quality bases) assembled on 2009-08-08

> UFO06186.5prime
CAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGCGGATAGTT
TGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTTGCTTTGGC
CCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAGGTGGCGCA
ATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGCTGCTGCTC
AAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAACGTTCGGA
AAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGAACA
ATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAAAGCCGCTG
GGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTGCTAAAGCA
AAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAAAAAAAGTT
TCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCGTCAAGGGA
ATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATGGGAGCACC
GGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAATAATGTAG
CACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGCTGGACATG
ACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTACAATGACTT
CTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCAGCTGAGCA
AATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGTACTACAAC
AATAATAACAATATTGTTAATAACAATAACAACTCACCGGAGCTGTACAA
GCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACCACCATATC
GTGACCCGCCACCCCCGAGAAAACAGCCCCATGTGCCAGGGGCAGCGTTT
GGCCAGCAGCAATGCGGACACCATGTCCAATGCTCTCTCGACGAATTCGT
TTCTCAGCGACTACGATCAGCATAGCAGCCACACACTATAGCATCAACAA
ATAATAGCAGGCCATGGGAGGAGGGTGAGCCATGTTCCGGAACCCCGCAG
TATAACGATGC

UFO06186.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-RA 3429 CG5053-RA 621..1724 9..1109 5220 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25663144..25663807 449..1109 2760 96.7 Plus
3R 32079331 3R 25662631..25663008 78..455 1890 100 Plus
3R 32079331 3R 25662415..25662487 9..81 365 100 Plus
Blast to na_te.dros performed 2014-11-28 23:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 14..59 788..832 128 78.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7052..7097 788..832 128 78.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 32..68 796..832 122 81.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7070..7106 796..832 122 81.1 Plus

UFO06186.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:23 Download gff for UFO06186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 608..1719 1..1111 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:39 Download gff for UFO06186.5prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 613..1724 1..1111 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:33 Download gff for UFO06186.5prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 613..1724 1..1111 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:33 Download gff for UFO06186.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25662407..25662486 1..80 95 -> Plus
3R 25662634..25663007 81..454 100 -> Plus
3R 25663150..25663807 455..1111 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:39 Download gff for UFO06186.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21488129..21488208 1..80 95 -> Plus
arm_3R 21488356..21488729 81..454 100 -> Plus
arm_3R 21488872..21489529 455..1111 97   Plus