UFO06188.5prime Sequence
1112 bp (992 high quality bases) assembled on 2009-08-08
> UFO06188.5prime
CAGTCGACATGGCCAACTTAAGCTGGCTGAGCACCATCACCACCACCTCC
TCCTCCATCAGCACCAGCCAGCTGCCATTGGTCAGCACAACCAACTGGAG
CCTAACGTCGCCGGGAACTACTAGCGCTATCTTGGCGGATGTGGCTGCAT
CGGATGAGGATAGGAGCGGCGGGATCATTCACAACCAGTTCGTGCAAATC
TTCTTCTACGTCCTGTACGCCACGGTCTTTGTCCTGGGTGTCTTCGGAAA
TGTCCTGGTTTGCTACGTAGTTCTGAGGAATCGGGCCATGCAGACTGTGA
CCAATATATTCATCACGAATCTGGCCCTGTCGGACATATTGCTCTGCGTC
CTGGCGGTGCCATTTACTCCGCTTTACACGTTCATGGGTCGCTGGGCCTT
CGGCAGGAGTCTGTGCCATCTGGTGTCCTTTGCCCAGGGATGCAGCATCT
ACATATCCACGCTGACCCTCACCTCGATTGCCATCGATCGGTACTTCGTT
ATCATATACCCCTTCCATCCGCGCATGAAGCTCTCCACCTGCATCGGGAT
CATAGTGAGCATCTGGGTGATAGCCCTGCTGGCCACCGTTCCCTACGGCA
TGTACATGAAGATGACCAACGAGCTGGTGAACGGAACGCAGACAGGCAAC
GAGACCCTGGTGGAGGCCACTCTAATGCTAAACGGAAGCTTTGTGGCCCA
GGGATCAGGATTCATCGAGGCGCCGGACTCTACCTCGGCCACCCAGGCCT
ATATGCAGGTGATGACCGCCGGATCAACGGGACCGGAGATGCCCTATGTG
CGGGTGTACTGCGAGGAGAACTGGCCATCGGAGCAGTACCGGAAGTGTTC
GGTGCCATCACAACCACTCTGCAGTTTGTGCTGCCCTTCTCATCATCTCG
ATTTGCTACGTGTGGATATCGGTGAGCTAAACCAGCGGGCCAGGCAGCAG
GATCGAAATCTCGAGACGGAGAGCGATCGGGATCGCAGAGCGCACACGCA
TGCTCATCGCATGTGCGATTCGACTCGCTGCTGCCCATCATGTGTCACTA
TCGATGACTCGATGAACAGTCACGAGTGACCTCCCATCTATTCTCTTTAG
CAGCTATGCCAT
UFO06188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-RB | 4374 | CG7395-RB | 355..1457 | 9..1078 | 4685 | 96.7 | Plus |
| sNPF-R-RA | 3243 | CG7395-RA | 727..1829 | 9..1078 | 4685 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20074977..20075915 | 944..9 | 4545 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:00 has no hits.
UFO06188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:22 Download gff for
UFO06188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPFR76F-RA | 694..1737 | 1..1022 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:19 Download gff for
UFO06188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 719..1762 | 1..1022 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:51 Download gff for
UFO06188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 719..1762 | 1..1022 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:51 Download gff for
UFO06188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20074880..20075922 | 1..1022 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:19 Download gff for
UFO06188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20067980..20069022 | 1..1022 | 97 | | Minus |
