UFO06189.5prime Sequence
1124 bp (1019 high quality bases) assembled on 2009-08-08
> UFO06189.5prime
CAGTCGACATGAGCCCGCCCATCGTCACGCGACGGAGTGCGCAGCAGGCA
AAGATTCAGACACGGGCAATGGCCAGTAAATCGAAGACGGGCACGACAGG
GGCGGCGACGGCGGCCGGCGGCACCGGCAGCAGCAGCGGCAGTATCAGCG
GCGGATTTAATGCCGCCGATCCGCGAAAGTCGAACAAACCGAACGCAGCG
CTCTTGGAGGCGAAACGTCGAGCTCGGAACAACATGCTCAAGAATCAGGG
CTGCGGATCGCAGGAGAGCGTCACGGATATATTCCAGAATGCTGTCAACA
GCAAGAGTCTGGTGCGGAAACCAACGGCACTGATCTACGATGAGTCCATG
AGCCAGCACTGTTGCCTGTGGGACAAGGAGCACTACGAGTGTCCCGAGCG
CTTCACACGAGTCCTGGAACGCTGTCGCGAACTAAATCTGACGGAGCGCT
GCCTGGAGTTGCCCTCGAGATCGGCGACCAAGGATGAAATTCTGCGCCTG
CACACAGAGGAGCACTTCGAGCGGCTGAAGGAGACGTCCGGGATTCGCGA
TGACGAGCGCATGGAGGAGCTGAGCTCCCGCTACGATTCAATTTACATTC
ATCCGTCCACATTCGAGCTCTCCCTGCTGGCCAGCGGCTCCACCATCGAA
TTGGTGGACCATCTGGTCGCCGGAAAGGCGCAGAATGGCATGGCCATCAT
CCGGCCACCGGGTCACCATGCGATGAAGGCCGAGTACAACGGTTATTGCT
TCTTCAACAACGTGGCACTGGCCACCCAGCACGCCCTCGATGTTCACAAG
CTGCAGCGCATCCTGATCATCGACTACGATGTGCATCATGGGCAGGAAAC
CCAGCGGTTCTTCTACAACGATCCCAGGGTGGTTTACTTCTCCATCCATC
GCTTCGAGCACGGAAGCTTCTGGCCGCATCTGCACGAGTCGGATTACCAC
GCCATTGGATCGGGAGCGGGCACGGGATACAACTTCATGTGCGTTGAATG
CGACGGGTATGAACAATGGGCGATACTGGCATTTCAGCAGCTGCTGCTGC
CGTGCCTGCAATCAGCGGAGCTGATCATCGTTTCGCTGCTTGATGCGAGC
CTGGCTGTCCGAGGGTGAATGGAG
UFO06189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HDAC6-RG | 4483 | CG6170-RG | 750..1885 | 7..1124 | 5125 | 97.8 | Plus |
| HDAC6-RA | 4483 | CG6170-RA | 750..1885 | 7..1124 | 5125 | 97.8 | Plus |
| HDAC6-RF | 3272 | CG6170-RF | 109..1240 | 11..1124 | 5105 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15334989..15335269 | 11..291 | 1405 | 100 | Plus |
| X | 23542271 | X | 15336289..15336562 | 605..878 | 1355 | 99.6 | Plus |
| X | 23542271 | X | 15335545..15335729 | 421..605 | 925 | 100 | Plus |
| X | 23542271 | X | 15335350..15335480 | 291..421 | 655 | 100 | Plus |
| X | 23542271 | X | 15336612..15336758 | 875..1019 | 620 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:08 has no hits.
UFO06189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:21 Download gff for
UFO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 1100..2217 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:21 Download gff for
UFO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 745..1862 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:50 Download gff for
UFO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 745..1862 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:50 Download gff for
UFO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15334981..15335268 | 1..290 | 98 | -> | Plus |
| X | 15335350..15335480 | 291..421 | 100 | -> | Plus |
| X | 15335546..15335729 | 422..605 | 100 | -> | Plus |
| X | 15336290..15336561 | 606..877 | 99 | -> | Plus |
| X | 15336615..15336856 | 878..1104 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:21 Download gff for
UFO06189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15229014..15229301 | 1..290 | 98 | -> | Plus |
| arm_X | 15229383..15229513 | 291..421 | 100 | -> | Plus |
| arm_X | 15229579..15229762 | 422..605 | 100 | -> | Plus |
| arm_X | 15230323..15230594 | 606..877 | 99 | -> | Plus |
| arm_X | 15230648..15230889 | 878..1104 | 91 | | Plus |
