UFO06190.5prime Sequence
1160 bp (1055 high quality bases) assembled on 2009-08-08
> UFO06190.5prime
CAGTCGACATGCGGCCACCAATGGCGATGCCATCGATGCAAGCGTCGACG
GGTTTGCAGCCGACTGAAGTGCATCCGGTGCAACAGCTGCACTTGCATGC
CACGCCCTCAAATCCTTCGGATATACACCAGGATCGGAGTCCACACAACC
ATAACGCCAAACTGCCACCGCTGGAACTGCTGGTGGAGAACAAGATTAGC
TACAGCAGCTACCAGCAGCACGCCAAGGACCTCAAGCACCAGAGTCACAA
TCAAAACCGATCCAAGAGAAGTTCCCTCAGCAGTCCCTCGTCCAGCGAGG
ATTGCGTTAGTGCTGCCAGGGCCAATATCTTTGATGACGCCGCCGAGAAC
TTCGTGATCAATTTCCCCTCGGAGTCGGCCACCTCGCAGCATTTGCTGCC
ACTGTCGGAGACTGTGCCCCTGCTCACCCACATCGAGGCCACGGTGGTGG
ATAAGCAGCGCTCCATAAGGCTGAACAAGAACAGTGCCTCGCTGATCTTC
ACGAAGAAGGAACTTAACCAGGGAACCAGGGAACATCATCATCAGCACAA
TAATCAGCAGCACCAGCAGCAGCAACGGCGTCCGCACCATAGCAGTTTGT
ACGGAGTGGGCAGGAAGCCGACCAAGCACCTACCGCCAACTAGAGGACAC
CACCAGAGGCGCAGTCTACCTCTTAGCTACAACAACAATCTGGTGACCAC
CGCTCCATCAGCAGGTGGGGCAGGAGGTCCCGGTGGAGCAGCCAAACTTG
TGCCGCTCAAGCAGCAGCATCAGCACCACGGAGCGGGCCACACGGCACCA
CCCACGGCGAACGTCGTTGTTGCCGGTGGAGCGGGAGCGGCGGCTCCGTC
TGCCCGCAAGCAGCTCTCCTACTCCTGGTACGCGCCCGTCTACAGTGCGC
TCGAGGAGGAGCTGGAGCAGGACTCGCGGGACTCCTCGCCAATCCACAAT
CTGGCCAACACAAAGCAGCACCAGCGGTCCGCCAGCCAAAAGCATCCACC
GCCCTGCATGCCACGCCCCCGCCACGATCGCCGCCCACGATCCGCGACGC
CGAGACGATGCCCTGCTGAACGCAGACGCGCCGCAGAATCATCATTCCTC
CGCATGGTGACCTGGCGGACCGGTCAGGATGGAAGTTCCGTGAGCCGGGC
CGAGAATCGG
UFO06190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33144-RB | 5061 | CG33144-RB | 878..2000 | 9..1123 | 5230 | 98.3 | Plus |
| CG33144-RA | 4539 | CG33144-RA | 698..1820 | 9..1123 | 5230 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10756529..10757450 | 930..9 | 4610 | 100 | Minus |
| 2R | 25286936 | 2R | 10756301..10756408 | 1031..924 | 430 | 97.2 | Minus |
Blast to na_te.dros performed 2014-11-28 20:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6822 | 503..589 | 164 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2512 | 532..722 | 158 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6895 | 516..688 | 156 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6913 | 532..726 | 146 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2510 | 532..664 | 144 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7007 | 532..771 | 142 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6944 | 553..768 | 138 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2470..2534 | 532..595 | 132 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2668 | 493..597 | 132 | 63.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1047..1161 | 480..589 | 131 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1525..1582 | 532..589 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6855 | 532..589 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2488..2557 | 532..602 | 127 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1113 | 541..594 | 119 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 532..576 | 116 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2869 | 503..589 | 111 | 58.6 | Plus |
UFO06190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:20 Download gff for
UFO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 670..1773 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:40 Download gff for
UFO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 694..1797 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:21 Download gff for
UFO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 694..1797 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:21 Download gff for
UFO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10756224..10756402 | 930..1103 | 91 | <- | Minus |
| 2R | 10756530..10757454 | 1..929 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:40 Download gff for
UFO06190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6643729..6643907 | 930..1103 | 91 | <- | Minus |
| arm_2R | 6644035..6644959 | 1..929 | 99 | | Minus |
