UFO06192.5prime Sequence
1128 bp (985 high quality bases) assembled on 2009-08-08
> UFO06192.5prime
CAGTCGACATGCAGCAAAAACCCCGAAACAACGGCTATCCGGGCACCCTC
ATCTGCGCGGTCCTCCTCGTCCTGCTGTCCACCGGTGTCAGCGGCCAGAA
GCAGTATTCCAAGGCAAGAAAGTTGGAACTGAGGGAGGATGTGCGGCGCA
TGTTCCAGCACGCCTACGATGGTTACCTGCGCCACGCCTCCAACTACGAT
GAACTGCGTCCGCTGACCTGCGATGGCCACGACACCTGGGGCAGCTACTC
CTTGACACTGATCGACGCTCTGGACACGCTGGCCACCATGGGCAACTTCA
CGGAATTCCGCCGCGCGGCAAGACTGCTCGAGGAGAAGATGGATTTTGAC
AGGGACATCAACGTGTCCGTGTTCGAGACAAACATCCGCATCGTGGGCGG
GCTGCTGTCCGCGCATCTGCTCTCCAAGCGTGCTGGCGTAGAGCTAGAGC
CAGGATGGCCCTGCAAGGGACCTCTGCTGCGACTGGCGGAGGATGTGGCC
CGACGATTATTGCCAGCCTTCGTCACGAACACGGGTATGCCTTATGGCAC
GGTGAACCTGCGCTATGGCGTGCCCAAGGGCGAGACCTCTATAACCTGTA
CGGCGGGCGTGGGGACATTCCTCATCGAATTTGGTACCCTTAGCCGGTTG
ACCGGGAAAACCATCTACGAGGATGTTGCTATGAAGGCGGTACATGCTCT
ATGGGCATATCGCTCGCCCATTGGACTTTTTGGCAATCACATCGACGTGC
AGAGCGGTCGTTGGACCGCCCTCGACTCTGGTATCGGAGCAGGAGTGGAT
ACCCTTTTTTGAATACCTAGTTAAGGCATCTGTCCTGCTCATCGCCAGAC
TCTTGGAGTATCCATGAGCTCGCGGGGCCATTGATAGACATGCGGAAGGA
GACTGGTACGTGTGGGTAGCATGACAAAGGCGCGTCACCTTCCCGTCTTC
AGTCCCTGGGAGGCGTTTGGCCGGCATCTGAGCATTTTGGCGACACGGAG
CGCTGCCACAATCCGGTACATTGGGGTCTGGAAGAGTACGCTTTCTGCGA
GTTTATACTTGCTGCTGGAAAGCTCGCGAAATCGGAGGTACCCTGCACGG
ACTATCGGTCACTTGTATCTTTCGGCAG
UFO06192.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edem1-RD | 3935 | CG3810-RD | 361..1452 | 9..1069 | 4595 | 96.6 | Plus |
| Edem1-RE | 3883 | CG3810-RE | 361..1452 | 9..1069 | 4595 | 96.6 | Plus |
| Edem1-RA | 3670 | CG3810-RA | 503..1594 | 9..1069 | 4595 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1906641..1907436 | 919..132 | 3500 | 98 | Minus |
| X | 23542271 | X | 1907494..1907619 | 134..9 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:05:17 has no hits.
UFO06192.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:18 Download gff for
UFO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 493..1578 | 1..1057 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:35 Download gff for
UFO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 493..1578 | 1..1057 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:29 Download gff for
UFO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 493..1578 | 1..1057 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:29 Download gff for
UFO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1906482..1907434 | 134..1057 | 96 | <- | Minus |
| X | 1907495..1907623 | 1..133 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:35 Download gff for
UFO06192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1800515..1801467 | 134..1057 | 96 | <- | Minus |
| arm_X | 1801528..1801656 | 1..133 | 96 | | Minus |
