UFO06193.5prime Sequence
1063 bp (937 high quality bases) assembled on 2009-08-08
> UFO06193.5prime
CAGTCGACATGAAGGAATCGGGAAGTGTCAGCAAAAATCAGCCGCAGACC
TCAGAGGCCAGAGGCTCGATTATAACCTACAGTCCCAGCAAATTTCTGAC
TAGCGTTGGAACAGGCAGAACGACATACAGCACACATACACACACAACAA
CAGCAACGTCGGCGGCGACAACCGCAACAAAAACAAACAATTTACCAATG
GGCGGATCCAGTGCCGCTTATTATGTGGTAAAGGCTGGCTCCCTGGGCAG
CGCTGCCTCCATGTCGGGTTGCATCAAAGTCAGTTCTCCGCCAAAGGGGC
CGCCGATGGCTAAGTCGCCCGCCCTGGTCGTTACATCGCCCTGCACGCCA
ACAGAGAGTTCCAGTACCATTTCGGCCCCTAGTGAATCCTCCTTTAGCGA
GAAAATGGAGCACAGCTATATGCGAGATACGCCAGTGCGCAGCGATGTTC
ACAACGGCCTAACGCCCGCTAGGAACATTCTGGTCCGCCATCCGCCACAG
TGTCCCAGTTGCCACACATATCCGCCGCAGCACGAGGAGCTGTCAGAGAT
TCAGCAGGCCCATGTGCCGCCCTATGATGAGGTAGTCGCCAAGGAGGCAA
TGAATGAATGCGCTCGTATTGCAAAATACGTAAAGAACAACAATTCGGAT
GAGCAAGATTGGGTGGCGCGCGTTAATAAATTTAATTGGACGCCCATGCA
GGAGATGGTTTTCGAGAAGGTCTGCTCAATTCTGGACCAGGATCAGTTGG
CACGCTTGGCCAACGACAAACGTCAGCACGAGCCTATCCATCGTCGCATA
AGCTCGGACAAATCCGCGTCCAGGTTTCGCAACTTCTAGCCAGCGTGGCT
TGGAGTCACGCATTACGCAGTGATCCATGCTCTGCTCATGAGCACTGTCG
CTCGTATATGGCCTCTATCTGGAAATCTCAGACTCTGAGACAGTGCTCAC
TTAGTGACAGATGCTGGTTGTAGCCCGTAAATAATAGTCAGGACTGCTGC
ACGGATGAAAACCATGCACAATCATGCAGTTCGTCAGCTAACCTAGCCAT
CATGTGTGTGCTG
UFO06193.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd1-RG | 3804 | CG8233-RG | 295..1305 | 9..999 | 4530 | 97.7 | Plus |
| Rcd1-RE | 3864 | CG8233-RE | 295..1305 | 9..999 | 4530 | 97.7 | Plus |
| Rcd1-RH | 3795 | CG8233-RH | 295..1305 | 9..999 | 4530 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14152064..14152414 | 359..9 | 1755 | 100 | Minus |
| 2R | 25286936 | 2R | 14151607..14151926 | 679..360 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 14151333..14151546 | 890..680 | 920 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:56:26 has no hits.
UFO06193.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:17 Download gff for
UFO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8233-RB | 270..1296 | 9..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:17 Download gff for
UFO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RH | 295..1321 | 9..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:17 Download gff for
UFO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RH | 295..1321 | 9..1011 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:17 Download gff for
UFO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14152064..14152414 | 9..359 | 100 | | Minus |
| 2R | 14151191..14151546 | 680..1011 | 92 | <- | Minus |
| 2R | 14151607..14151926 | 360..679 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:17 Download gff for
UFO06193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10039569..10039919 | 9..359 | 100 | | Minus |
| arm_2R | 10038696..10039051 | 680..1011 | 92 | <- | Minus |
| arm_2R | 10039112..10039431 | 360..679 | 100 | <- | Minus |
