UFO06201.5prime Sequence
1088 bp (982 high quality bases) assembled on 2009-08-20
> UFO06201.5prime
CAGTCGACATGGCCTGGCGATTCAAGGCTTCCAAGTACAAAAATGCCGCA
CCCATTGTGCCCAAGGCGGAGGCATGCGTCCGCGAGATCTGCGTGGGCAG
CTACCAGACGTACGGTAACAACATCGCCGCCTCCGGCGCCTTCATGGCCT
TCAACTGGGAGCACACCGGGTCCAGCGTCGCTGTCCTCCCGCTGGACGAC
TGCGGCCGGAAGAGCAAGACCATGCCGCTGCTCCATGGACACACGGACAC
AGTGACGGACCTTAAGTTCTCCCCGTTCCACGACGGGCTGCTGGCCACCG
CCTCGCAGGATTGCCTGGTCAAGATCTGGCACATACCGGAAAAAGGTCTG
GAGCAGTCGCTTTCCGATCCGGAGGCAATCTTCTCACACAAGCAGAGACG
CGTAGAGACAGTGGGCTTCCATCCAACAGCAGATGGTTTGATGTACTCCA
CAGCCGCCGGCTGCGTGGCTCTCTTCGATCTCAGCACTCAAAAGGAGATA
TTCTCGAACAATGAGCACCCCGAGGTGATACAGTCGGCCAGTTGGCGCGA
GGACGGTTCTGTTTTGGCCACCAGTTGCAAGGATAAGAATGTGCGAATCT
TCGATCCCCGTGCCGCTGGTTCACCCATCCAGCTGACTGCTGAATCGCAT
CAGAGCATCAAGGATTCGCGGGTGGTGTGGTTAGGCAATCAGCATCGCAT
CCTGACCACTGGCTTCGATGCGGCCCGCCTGCGACAGGTGATCATCCGTG
ATGTGCGCAACTTCAACACTCCAGAGAAAACTCTCGAACTGGACTGCTCG
ACGGGCATATTGATGCCCCTCTTCGATCCCGACACCAATATGCTTTTCCT
AGCCGGAAAGGTGACACAACCATTAACTATTTGGAGATTACGGACAGGAT
CCGTATTTGATTGAGGGCTTGCGTCATACTGGCGAGCAGACGAAGGAGCT
TGTCTCGTGCCCAGCGGGCACTAAAGTCATGGAGCAGAGTACGGTGTTGC
ATTGACCTCCAACATGTCTACCATCATGTACAGTGCCGAAGACATACTGA
TTCCACGCCGATCTATATCGGAACCTGGCTCAAGACAG
UFO06201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pod1-RG | 6374 | CG4532-RG | 315..1423 | 8..1088 | 4895 | 97.5 | Plus |
| pod1-RF | 6031 | CG4532-RF | 315..1423 | 8..1088 | 4895 | 97.5 | Plus |
| pod1-RD | 5837 | CG4532-RD | 354..1462 | 8..1088 | 4895 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6806881..6807364 | 505..983 | 2170 | 99 | Plus |
| X | 23542271 | X | 6805909..6806220 | 8..319 | 1560 | 100 | Plus |
| X | 23542271 | X | 6806617..6806804 | 317..504 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:23 has no hits.
UFO06201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:22 Download gff for
UFO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pod1-RB | 505..1621 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:35 Download gff for
UFO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pod1-RD | 346..1462 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:02 Download gff for
UFO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pod1-RD | 346..1462 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:02 Download gff for
UFO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6805901..6806218 | 1..317 | 98 | -> | Plus |
| X | 6806618..6806804 | 318..504 | 100 | -> | Plus |
| X | 6806881..6807437 | 505..1041 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:35 Download gff for
UFO06201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6699934..6700251 | 1..317 | 98 | -> | Plus |
| arm_X | 6700651..6700837 | 318..504 | 100 | -> | Plus |
| arm_X | 6700914..6701470 | 505..1041 | 96 | -> | Plus |
