UFO06204.5prime Sequence
1047 bp (753 high quality bases) assembled on 2009-08-20
> UFO06204.5prime
CAGTCGACATGCAGCAAACGCAATGGAATAAGGACAGGCAGGAGGATAGA
AACAACAATAGCGGCAGCAGGAGCGAGCAGGATAGCGGCTGTCATCGGCG
TCTTTTCCTGTGCATTGCCAAGGCTGTGAAACAATTCATTGATCTCTGCA
ACAATCTAGGTGCTAACTGCAGCACGACGACAGCCACATCCCCGTCAACT
TCCTCCTCCTCAGCCAGCAGCACGCAGAACTTAATAGCAGTAGTGCCGCC
ACAGTTGCAGCAGCTGCAGGTGCAATTACCGGCGCCAGGTGGAGGAGGAG
GAGCAGGTGCAGGAGGAGGAGGTGGTGGAGGTGGGGGAGCTGCGCCTGTG
AGGCGCCACATCTCGCATACGACAGCCGTGAAGTTTTTGTACGCCCGTAA
ATTTGATATACCACGAGCAGTCTCACTGTACGAACAGCATGAACAGATCC
GCCTGAAGGAGTATCTATATAACATCCATCCGGATGTGGAGCCCTTGCGC
TCCGAGTTGCAGACCGGCAAGTTCACAATCCTGCCCGCACGCACTTCCAG
TGGCGCTGCCATCGCCCTTTTCACCGCCAATCGACACATTCCGCTGAGCG
TTTCGCACACAACCACGCTGCAGGGCATCGTCTATCAGCTGGACAGTGCG
CTCCAGGATTCTGAGACGCAGCGTGCCAGGCTCGTTTTTATCTACGACAT
GAGCGGCTCCTGGTATTCCAACTTCGACTACAACCTCTCCCAGAAGATTC
TCACTCTGCTTAAAGCCGCCTATCCAGCGCGTCTGAAAAGGTCTGATCGT
GACGCGCCCCTGTGGTTCAGGCACCCTTCAGATCTGCGTCTGTCGATGCG
CGAAGAAGCTGCACCAGCGACTGATCCCTGTATCGGTGCCTCAATTCGGG
CTGAACGTGCCGCGGAGGCGCTGCTCATCCCTTGGGTGCTCGCTGGAAGT
CCGATCACGCCTCATGATGCTCCGCTGCCGCCAATCAATGACAATCCTGA
AGAACTACTGCTGCCAATACCGTGGATGTGCAAGTGATTCCTGATCC
UFO06204.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0232-RA | 3046 | CG32697-RA | 179..1210 | 9..1030 | 4220 | 95 | Plus |
| l(1)G0232-RB | 2969 | CG32697-RB | 214..1133 | 121..1030 | 3660 | 94.4 | Plus |
| l(1)G0232-RG | 5668 | CG32697-RG | 487..1405 | 122..1030 | 3655 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9643957..9644369 | 533..121 | 2050 | 99.8 | Minus |
| X | 23542271 | X | 9643658..9643888 | 763..533 | 1050 | 97 | Minus |
| X | 23542271 | X | 9650484..9650598 | 123..9 | 575 | 100 | Minus |
| X | 23542271 | X | 9630860..9631090 | 992..770 | 250 | 85.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:33:27 has no hits.
UFO06204.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:23 Download gff for
UFO06204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RA | 153..1163 | 1..1003 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:04 Download gff for
UFO06204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RA | 172..1182 | 1..1003 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:18 Download gff for
UFO06204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RA | 172..1182 | 1..1003 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:18 Download gff for
UFO06204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9643657..9643887 | 534..764 | 96 | <- | Minus |
| X | 9643957..9644367 | 123..533 | 99 | <- | Minus |
| X | 9650485..9650604 | 1..122 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:04 Download gff for
UFO06204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9544518..9544637 | 1..122 | 96 | | Minus |
| arm_X | 9537690..9537920 | 534..764 | 96 | <- | Minus |
| arm_X | 9537990..9538400 | 123..533 | 99 | <- | Minus |
