UFO06206.5prime Sequence
1113 bp (1009 high quality bases) assembled on 2009-08-20
> UFO06206.5prime
CAGTCGAACATGGTCGCTGGTCAGTGTGTCGCTGGTCACTGTGTGGAGCA
CAGATGGTGGCCACTTCGGCCCTCTTCGCTGCCGATAGAAGGGATAGAAG
GCCCATGCAAAGCTCCAGAGAATAACACAGTGTGCATTACTTTCTCCCCC
AGCTTCACGACGTCTTGCAAACGGTTGAAAATGGAGAAGACTCCCCGGTA
CACGCAGCGGGAGCGGAACATGGTGTTGAGCTACGCGGCGCAGTACAAGG
ATGTGATCGAGAACAAGCGCACGGACGCGGAGTCCAACCGCAAGAAGGAC
GAGGTGTGGCTGCAGATCGCCAAGGAGTTCAACTCGCGGGTCTACCACCA
GCGCAGCGCCAAGCAGCTGCGCCAGCTTTACAAGAACATGAAGCTGCTGC
TCAAAAAGGACCTATGCGGCGAGGACAAGAGCAACCATTCGTTCATGGAC
CTGCTCAACACGCTGTCGCACCAGGAGTCCGTGGCCCAGTACATTGCCGA
GCAGCTGTCGCCGGAGGGCGCGGGCGGTGGCGGCGGCGGCGGTAAGCAAG
GCGGCGCGGGCAACGGAGGCGGAAACGGACACCAATCGGACGACTACGAC
GACTCCAAGATGCCCCACTACCACGAGGGCATGGACACGGACGTGATCCT
TATCAAGTCGGAGACAATTAGCGACAACGAGCAGACGGACAATGGCATGG
ACTGCCTGGACGAGGACGATGACGACGACTGCTTGAGCCACAAGGCGCCG
GAGGTGTGCCTCGAGGAGGAGGACGACGTGCTCTTTCCAACGGACGTGCG
CCAGCTGCAGCAGGTGGGATCGTCCGGAGCCGCCGGCGGTGGTGTCTCCG
GAGGCTCCCTTCCCGGAAACATGTCTAGCAACGGGATTACCGAAACCAGT
CGCCGCGCCGCAAGCTCGCCCGTGTGCTCCACGAAGACCTCGATTAGTTC
CAGCGGGAGCTACGCATCACGCCCAAACCGGAAATCACTATCCAGACGGG
GCCACATACGCGTGGGCAGCTTGCTAACTCCACAGACGCTGCGACGACGT
CCGGCAAGGAGCTGTCTATCACGCAGCATGCGTTCATGCAGTGGAGCTGC
GCTCAACGGACAG
UFO06206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 4058 | CG32813-RK | 891..1964 | 10..1071 | 5020 | 98.5 | Plus |
| CG32813-RN | 3585 | CG32813-RN | 557..1491 | 149..1071 | 4325 | 98.3 | Plus |
| CG32813-RL | 3484 | CG32813-RL | 456..1390 | 149..1071 | 4325 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1389458..1390057 | 10..609 | 3000 | 100 | Plus |
| X | 23542271 | X | 1390274..1390691 | 608..1022 | 1945 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:22 has no hits.
UFO06206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:24 Download gff for
UFO06206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RA | 798..1838 | 5..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:06 Download gff for
UFO06206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 889..1929 | 5..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:57 Download gff for
UFO06206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 889..1929 | 5..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:57 Download gff for
UFO06206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1389456..1390057 | 5..609 | 99 | -> | Plus |
| X | 1390276..1390714 | 610..1042 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:06 Download gff for
UFO06206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1283489..1284090 | 5..609 | 99 | -> | Plus |
| arm_X | 1284309..1284747 | 610..1042 | 97 | | Plus |
