UFO06211.5prime Sequence
1103 bp (1013 high quality bases) assembled on 2009-08-20
> UFO06211.5prime
CAGTCGACATGCACAGCAACAATAATAGCAGCAGACTCAACAACAACATA
AGCAACAATTATTATCAACAAAAACAATCGCTTATACGCTATTTGGATCG
AGCTGCTGTTGGTCTGAACGGTGTCGAGTTCGAGGGCAGCAAGCTGCATG
CCGAGCAGCTGGACAAGAACCAGCGGCGTAGCCAGCGTAACCAGCGCAAT
CCGTATCCGGGTATGCCCGGTCCCGGACGCCAGGCGGACTTTCCGCTGCG
CATTCTTGTGCAGAGCGAAATGGTGGGCGCCATCATTGGTCGACAGGGCA
GCACCATCAGGACGATCACACAACAGAGCCGTGCTCGCGTCGACGTCCAT
CGTAAGGAGAATGTTGGATCGCTGGAGAAATCGATTACGATCTATGGCAA
TCCGGAGAACTGCACCAACGCCTGTAAGCGCATCCTGGAAGTTATGCAGC
AGGAGGCCATCTCTACGAATAAGGGTGAAATTTGCCTCAAAATACTCGCC
CACAACAATTTGATTGGACGAATCATTGGCAAGTCGGGCAATACCATTAA
ACGGATCATGCAGGACACCGATACGAAGATCACTGTCAGCTCTATCAACG
ACATCAACAGCTTCAATTTGGAGCGAATCATTACGGTCAAGGGATTAATT
GAGAACATGTCGCGTGCTGAGAACCAAATTAGCACCAAGCTGCGCCAGAG
CTACGAGAACGATCTGCAGGCGATGGCGCCGCAGAGCCTCATGTTCCCCG
GTCTCCATCCGATGGCAATGATGTCGACACCGGGCAACGGCATGGTCTTC
AATACGAGCATGCCGTTCCCCTCGTGTCAAAGCTTTGCCATGTCCAAGAC
TCCGGCTAGTGTGGTGCCACCGGTCTTCCCCAATGACCTACAGGAAACCA
CCTATCTCTACATACCCAACACGCTGTCGGCGCCATTATCGGCACAGGGG
CTCGCATATCCGAGCATAATGCGCTTCTCGACGCATCCCTTAAATAGCCC
CCCCTCGACGCCGACAGCCGCTGACACAACGGAGCGCAGGTGACATTGTT
GCACCGAGTCAATGGAGGCCAGTACTTGATCTCGAGATGCCGAAAGGCTC
ATG
UFO06211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Imp-RB | 2863 | CG1691-RB | 307..1360 | 9..1051 | 4960 | 98.8 | Plus |
Imp-RA | 3300 | CG1691-RA | 528..1581 | 9..1051 | 4960 | 98.8 | Plus |
Imp-RC | 6762 | CG1691-RC | 501..1554 | 9..1051 | 4960 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10798000..10798545 | 1016..475 | 2470 | 98.5 | Minus |
X | 23542271 | X | 10798619..10798994 | 475..100 | 1880 | 100 | Minus |
X | 23542271 | X | 10805266..10805357 | 100..9 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2450 | 5..77 | 137 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2458 | 13..76 | 137 | 70.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2429 | 13..77 | 133 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2374 | 14..76 | 132 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2486 | 17..58 | 120 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2951..2998 | 13..57 | 116 | 75 | Plus |
BS | 5142 | BS BS 5142bp | 2037..2076 | 21..60 | 110 | 75 | Plus |
UFO06211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:20 Download gff for
UFO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Imp-RC | 491..1535 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:40 Download gff for
UFO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Imp-RC | 495..1539 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:14 Download gff for
UFO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Imp-RC | 495..1539 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:14 Download gff for
UFO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10798619..10798993 | 101..475 | 100 | <- | Minus |
X | 10805266..10805363 | 1..100 | 96 | | Minus |
X | 10797973..10798544 | 476..1038 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:40 Download gff for
UFO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10692006..10692577 | 476..1038 | 98 | <- | Minus |
arm_X | 10692652..10693026 | 101..475 | 100 | <- | Minus |
arm_X | 10699299..10699396 | 1..100 | 96 | | Minus |