UFO06212.5prime Sequence
1097 bp (989 high quality bases) assembled on 2009-08-20
> UFO06212.5prime
CAGTCGACATGTCCAACGGCAAGGCGACGGTCTCGTTCTTCGAGACCGGG
AGCACCAAACAGTTCGAGTACTGCTACCAGCTCTATCCCCAGGTTCTTAA
GCTAAAGGCCGAGAAGCGCTGCAAGAAGCCGCAAGAGCTGATCCGCCTGG
ATCAGTGGTATCAGAATGAACTGCCCAAATTGATTAAGGCACGCGGCAAG
GACGCGCATATGGTATACGATGAGCTCGTCCAGTCGATGAAGTGGAAGCA
GTCGCGCGGCAAATTCTATCCGCAGCTATCCTACCTGGTCAAGGTCAACA
CACCGCGCGCCGTCATCCAGGAGACAAAGAAGGCCTTCCGCAAGCTGCCC
AATCTGGAGCAGGCGATCACAGCTTTATCGAACCTCAAGGGCGTTGGCAC
CACAATGGCCAGTGCACTGCTGGCAGCCGCAGCTCCCGATTCGGCACCAT
TCATGGCCGACGAGTGCCTGATGGCCATACCAGAGATCGAGGGCATCGAT
TACACCACCAAGGAGTACCTCAACTTCGTCAATCACATTCAGGCCACCGT
GGAGCGCCTCAATGCGGAGGTGGGCGGGGATACGCCGCACTGGTCGCCTC
ATCGCGTGGAGCTGGCCCTCTGGTCACACTATGTGGCCAATGATCTCAGT
CCCGAGATGCTCGACGATATGCCGCCGCCTGGATCCGGCGCCTCCACTGG
CACCGGTTCACTCAGCACAAACGGCAACAGCAGCAAGGTGCTCGATGGCG
ACGATACCAACGATGGTGTGGGTGTTGATTTGGACGACGAAAGCCAAGGA
GCAGGCGGTCGCAACACTGCTACAGAATCGGAGACAGAGAATGAGAACAC
CAACCCGGCTGCTCTGACGCCTCTACAGTCGGGCGAGGCCAGACAACGCA
GCTGCCGTTGGCGCCGCCTGCAGACGGTGACTCCAACTTTGTTTCGACGA
TTCCACCTCCCAGGAGTTGATCATCGATGACACGATGGCACACACAGACA
CGCTACACTCACAGAGACGGTGAGCATCGCTAAAATGCATGCATCGGTCG
AGTGACACCGCTCGCCTCGACTCTGATGCATCAGAGGTCGCTAGACA
UFO06212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amun-RK | 3028 | CG2446-RK | 690..1783 | 9..1076 | 4820 | 97.3 | Plus |
| Amun-RJ | 2658 | CG2446-RJ | 320..1413 | 9..1076 | 4820 | 97.3 | Plus |
| Amun-RL | 2622 | CG2446-RL | 284..1377 | 9..1076 | 4820 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11712768..11713564 | 805..9 | 3985 | 100 | Minus |
| X | 23542271 | X | 11712184..11712369 | 982..802 | 670 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:16 has no hits.
UFO06212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:21 Download gff for
UFO06212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2446-RC | 666..1650 | 1..982 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:25 Download gff for
UFO06212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RI | 642..1626 | 1..982 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:57 Download gff for
UFO06212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RL | 278..1262 | 1..982 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:57 Download gff for
UFO06212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11712184..11712366 | 805..982 | 96 | <- | Minus |
| X | 11712769..11713570 | 1..804 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:25 Download gff for
UFO06212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11606217..11606399 | 805..982 | 96 | <- | Minus |
| arm_X | 11606802..11607603 | 1..804 | 99 | | Minus |
