UFO06213.5prime Sequence
1100 bp (976 high quality bases) assembled on 2009-08-20
> UFO06213.5prime
CAGTCGGACATGCAAGCGTCGCCGGATGCGTCCTTCGGGATTAGCTGCAT
CTTCTGCTGCGCTCTCTGTGTTCTTCACATACTTTATTTCCATACGTACA
TTTCCCTCCAGCGCTTGCCCTGTTTTAGTGTGGCAAACATCCACGCCAAG
TTAAAGGAGGGCCAGCATCCGTTGAGTGATTCCTACAAGCGGTACAAGCA
GCCCGGCATCACCACAGCCAGCCAGGAAGGACTTAGTAGCGCGGGTCAAG
GTCAACAGGGTCACCAGAGTCACCACCCGACGCACCAACCGCATCCGACG
GCGCAGCCACCACATGGAATCCTGAGGAGTGGCAATTCCCGACTCCATCA
GGTCTACGATGCGGGACGAGGACACCCTGGAATGACCGGACAGATTGGCC
ATTCCGGACAGACGCAAACACTACCAGGAGCATGTCGCAAGCATCCGAAT
GCCGGATCGAACTTAAATCTCTATCTGCATAATGACCTGGAGAGGCGTTT
TTACTTCGAAAAGCCAGCTGTGTCCAAGTGTAATCTGCACTCGCGCAGCT
TCGCCAAGTCGTTGAATGAGCTTTGCACGGATACGTCCGTGTCCTCCACC
CATGTTCCCGCACCCCTTCTCCCTTCCGCTGCCGACCCATTACCTGCCCC
CGCCCTGTTCGCCGACTTGCCTCAGGAATTTCCACTCACCCGATCCGTAT
CTACGGCCACGGAAATATATCCAGCTTCATCTTCGGCTCCAGCTCCGCCC
TCCGCTCAAATGAAACGAAAGCAGCAGCGGAACATGGCCACTAATACGAA
CACGAAGATCTCCAACAATCCCCCATCCTCCAACTCGCAGATGGCAGATC
AGTCGCGTCTTTGTGGCCTGAGCGTGCCTCCGGAGACCAAGATGAGCTAT
TCCAGGAGTCTGTCGGCGAGCTGTATGCGCAGCAGCCAAGAACATCTACT
ACATCAGTGCGGGATGAGCGAGAGAGAGCAGAGATCAGCAGCGGAGAGTC
GATGATCGCATCGCGATGACACATGACCGGATGCATGACCACGTCAGCAT
CACCGCATGAGAGACTCCTATGGGGGACCTGCAATTGGTTGCCGGTCCAC
UFO06213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11566-RA | 3798 | CG11566-RA | 1732..2700 | 10..968 | 4595 | 99 | Plus |
| stg1-RA | 3798 | CG33670-RA | 1732..2700 | 10..968 | 4595 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21108783..21109270 | 10..497 | 2440 | 100 | Plus |
| X | 23542271 | X | 21109722..21110192 | 497..959 | 1960 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:33:47 has no hits.
UFO06213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:29 Download gff for
UFO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1732..2689 | 10..959 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:19 Download gff for
UFO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1732..2689 | 10..959 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:32 Download gff for
UFO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1732..2689 | 10..959 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:32 Download gff for
UFO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21108783..21109270 | 10..497 | 100 | -> | Plus |
| X | 21109723..21110192 | 498..959 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:19 Download gff for
UFO06213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20979810..20980297 | 10..497 | 100 | -> | Plus |
| arm_X | 20980750..20981219 | 498..959 | 98 | == | Plus |
