UFO06217.5prime Sequence
1107 bp (982 high quality bases) assembled on 2009-08-20
> UFO06217.5prime
CAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTTGCTCCAGG
CCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAGAACGTGGC
TCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGATGAGAATC
CATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAACACAACGGC
TTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGACGGCGAGAA
CAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAAGTCCAACC
AAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCGGTCTCGAT
AAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTGGAACACCC
CTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTGGTCAAAGG
CAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATGGGAAATTG
GCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAGTATTTAGA
GCATTTGGATGATGGCAATCCCTTGGACGCCCTTCACGTCCTTCGCAGCG
AGCTGACTCCCCTGCAGCACAACATAACGCGTGTGCACCAGCTGTCCTCG
TACATGATGTGTTCTACCAACCAAGACCTTTACCAGCGTGCCAAGTGGGA
GGGCAAGGGCATCCTGTCGCGTGCCTTGGTCATGGAGCGCCTACAGACAT
TTATGCCGCCGTCGGTGATGATGTCGCCACGGCGCCTGCGCACCCTGCTG
CAGCAGCCGTGAGCTGCAGAGCCAACACTGCCCCTGCCACGACATGGCGT
GGGAGACGATCTGGAGACAGTCTCGCTGCTCACCGACCACTGCTGCACCC
ACGGACGGCTTTCCAATGCATACTATTCAAATTCTCACCGACCATTGGTA
CGAGAGTCTGGTCTGCAGTCTCGCGATGCTCAGCTACGACGCACAAACCC
ATGGATTACTGGATGTGATCGTACAGCTGACTAGACGTCCGTTCCGACGT
CAGCAGTACTGACTCGCACTGACGATCAGCACTTGCGGGACAGATCTGAT
ATGACTG
UFO06217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7611-RJ | 3001 | CG7611-RJ | 609..1570 | 8..967 | 4610 | 99 | Plus |
| CG7611-RI | 4464 | CG7611-RI | 2072..3033 | 8..967 | 4610 | 99 | Plus |
| CG7611-RA | 3810 | CG7611-RA | 1418..2379 | 8..967 | 4610 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21525257..21525717 | 8..468 | 2305 | 100 | Plus |
| 3L | 28110227 | 3L | 21525982..21526472 | 466..954 | 2200 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:12 has no hits.
UFO06217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:31 Download gff for
UFO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7611-RG | 931..1901 | 1..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:35 Download gff for
UFO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7611-RA | 1409..2379 | 1..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:29 Download gff for
UFO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7611-RA | 1409..2379 | 1..967 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:29 Download gff for
UFO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21525248..21525716 | 1..467 | 99 | -> | Plus |
| 3L | 21525984..21526485 | 468..967 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:35 Download gff for
UFO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21518348..21518816 | 1..467 | 99 | -> | Plus |
| arm_3L | 21519084..21519585 | 468..967 | 98 | | Plus |
