UFO06219.5prime Sequence
1133 bp (989 high quality bases) assembled on 2009-08-20
> UFO06219.5prime
CAGTCGACATGTCGCTGCAATTCCAAAACGACTGCGGGGACTCCGTTAAG
CAAGCCATCATCGAGGAGCTGCAGAACCTACTTAGCTCGGACACAGGAGT
CCTGCAGCAGACAGAAAAGAGGATCAAGCAGCTGGAGTACACGGAAGGCT
ATGGCGTCTACCTGTCCGAGATCATTATGAACCAGGCGCACGAGCTGCCA
CTCCGTCAAATCGCGATCGTGATGCTCACTCGTTACGTGGAGAACCACTG
GACGGATGACGATGATGTTAAAAGGAAAGCCAACGGTTGTATGGCCAGCG
AGCAGGCCAAGCGAACCATACGAAACATTCTGCCAAACGGACTGTATGAT
CCCAATTCAAAGATACGCTCCTCAGTCGCGCATACCATCTCCACCATAGC
CGCCACGGATTACCCACATTGTTGGGCGGAGCTGTTCGACATCATTGTCA
AATGCCTGGGCGGCAATGAGGATTCCATACACGGTGCCATGCAGGTGCTG
CAGGATTTCAGCTACGACGTGGAGCAAATCAAGGAACTGGGTCCAGTAGT
CATACCCGAAGTCTATCGCATCTTCGACTCCGAGCAAAATTACTCGATCA
AAACAAGAGTTTCGGCCATTCGCATCTTGAAGCCACTTTTTGCATCCATT
GCTGCACTGATCACCAACAAAGAAGAGCAGAGCACCATGATGAGCTCCAT
TTTGACAAACTTTATGGACAAGCTTATGCATTACCTGAGCATGAATAGCG
GCGCCGTTTCCAGTTTCCTGCTTCGCACGGAAATTATCAAGGTGTTTACC
CATTTGGTCAATGAGATGCCAAAGTACATCAACCCCTTTATGGACCGTGT
TCTGCCCATTGTCTGGCAGCTACTCACACAAATAGCCGAGACTTACGTGA
AGGTGTCGGTGAATCAGACTGAGACAAGTCCGCTGGCCAGCGCGACAGCG
AGGAAGATGACAAGCAGACCATTTCCAATCACTGATCATCAGATTCTTGG
AGTTCATCAACTGCATACTGACATGCAACAAACTACGTGGCAGCATCAAA
ATGTGCTGGCGACCTCATATACATAACATTGTTTACATCACTGACAGGAC
ATGAGACTGCATGATGATCGAAAAGTCTGGATG
UFO06219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp9-RD | 3243 | CG5252-RD | 105..1189 | 9..1088 | 5210 | 99.1 | Plus |
| Ranbp9-RA | 3311 | CG5252-RA | 173..1257 | 9..1088 | 5210 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11412913..11413559 | 146..792 | 3235 | 100 | Plus |
| 3R | 32079331 | 3R | 11413613..11413914 | 792..1088 | 1140 | 95.7 | Plus |
| 3R | 32079331 | 3R | 11412694..11412833 | 9..148 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:54:13 has no hits.
UFO06219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:33 Download gff for
UFO06219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 166..1272 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:04 Download gff for
UFO06219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 166..1272 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:33 Download gff for
UFO06219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 166..1272 | 1..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:33 Download gff for
UFO06219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11412687..11412832 | 1..147 | 97 | -> | Plus |
| 3R | 11412915..11413559 | 148..792 | 100 | -> | Plus |
| 3R | 11413614..11413929 | 793..1099 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:04 Download gff for
UFO06219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7238409..7238554 | 1..147 | 97 | -> | Plus |
| arm_3R | 7238637..7239281 | 148..792 | 100 | -> | Plus |
| arm_3R | 7239336..7239651 | 793..1099 | 95 | | Plus |
