UFO06222.5prime Sequence
1098 bp (979 high quality bases) assembled on 2009-08-20
> UFO06222.5prime
CAGTCGACATGGCAACTTTAGACGCGGAAGCCAACGAGGAGCAGTTCGGC
AATGATCAGCCCAAGTCGATGTCGGGTCCAATCATTGGGATTATCTATCC
GCCGCCGGAAGTTAGAAATATCGTTGACAAGACCGCCAGTTTTGTGGCTC
GCAATGGACCGGAATTCGAGGCGCGCATCCGCCAAAATGAGCTGGGCAAT
CCAAAGTTTAACTTCTTAAATGGCGGAGATCCCTACCACGCATACTACAG
ACACAAGGTCAACGAGTTCCGCGAGGGCAATGATGCCGGTATCACTGCCC
TTGCCAGCATGAAGCAGCTGGCGGTGACCAGTGCCGCCCAACAGCGCCAG
CAAGAGCTTCTCAAGCAAGTGGTGGAGCAGCAGTTCGTACCAAAGGAACC
TCCACCTGAATTCGAGTTCATAGCCGATCCGCCCTCCATTTCGGCGCTGG
ATTTGGACATTGTGAAGCTAACTGCTCAATTTGTGGCCCGTAACGGCCGA
CAGTTTCTGACCAATCTTATGAGCCGGGAGCAGCGTAACTTTCAGTTTGA
CTTCCTGCGACCCCAGCACTCGCTCTTCCAGTACTTTACCAAGTTGCTGG
AGCAGTATACCAAGGTCTTGATACCTCCAAAGGATTTGCTGGGCAAACTG
CGTTCCGAGAGCGCACCGGGCAGGAGCAGCATGAACCAGGTGCTGGAGCA
GGTTAAATATCGGGCCAACTGGCAGCGTCACCAAGAAGCACAACGCCGCC
GTGAGGAGGAGAAGATCGAAAGGGAGCGCGTGGCCTATGCCCAAATCGAT
TGGCATGACTTTGTGGTGGTGGAGACGGGGACTATCAGCCATTCGAATCG
GGCAACTTCCCGCCACCCACGATCCCGACGAGGTAGAGCCCGTGTGCTAA
TGGAAGAACGTCTAATGGACGAAGAGGGCGATACAGAAATGCAGATCGAG
TCGGACGACGAGGGGCGACTTCCAGGCTACACCTATTGGACAGCGTCTGA
AACTTCTCGCAAATGGAGAACCGTGTGGTATACAATGAGACGTATCGTCG
TATGTCAGCGACTGGCCAAAAGAACACCCAATGCAGACTGGACGAGCT
UFO06222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2558 | CG16941-RA | 96..1165 | 8..1067 | 4965 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17000996..17001573 | 1028..455 | 2490 | 98.1 | Minus |
| 3R | 32079331 | 3R | 17001634..17001807 | 455..282 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 17001864..17002028 | 282..118 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 17002151..17002260 | 117..8 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:33:38 has no hits.
UFO06222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:26 Download gff for
UFO06222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..1171 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:11 Download gff for
UFO06222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..1171 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:25 Download gff for
UFO06222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..1171 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:25 Download gff for
UFO06222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17001635..17001806 | 283..454 | 100 | <- | Minus |
| 3R | 17001864..17002028 | 118..282 | 100 | <- | Minus |
| 3R | 17002151..17002264 | 1..117 | 97 | | Minus |
| 3R | 17000945..17001573 | 455..1073 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:11 Download gff for
UFO06222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12826667..12827295 | 455..1073 | 96 | <- | Minus |
| arm_3R | 12827357..12827528 | 283..454 | 100 | <- | Minus |
| arm_3R | 12827586..12827750 | 118..282 | 100 | <- | Minus |
| arm_3R | 12827873..12827986 | 1..117 | 97 | | Minus |
