UFO06224.5prime Sequence
1098 bp (964 high quality bases) assembled on 2009-08-20
> UFO06224.5prime
CAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTTTGTGTCTG
CTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACAGACTTCCT
GCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGACACGACCA
TTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGCTGACCTGC
CGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGCCACAGGGA
TATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGACCAGAGAT
TCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGCGTATACGC
TACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATATCGACCAC
GCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACCCGTCACCG
ACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCACCATCAAT
CTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACCGTCATTTG
GTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGGCGGCATAT
CATTAGTCACCGAGAAAGGTGTGCTGACCACCAGCCGGCTCCTGGTGCAG
AAGGCCATCACCCAGGACTCGGGACTCTACACATGCACACCCTCCAATGC
CAATCCGACGTCGGTGCGCGTGCATATCGTCGATGGCGAGCATCCGGCGG
CAATGCATACGGGCAACAACGGTAACTCTACGGCGTCCCAGCCGCCGGTC
TTGCTGCCGCTGGTCCTGCTCACCTGCAGCACACTGATGCTCCTCCAGCT
GGTGGCCAGCTGCTCACCCTTGTCCCGGCCACGCCACCCGGCTGTAGACC
GTCAACAAGCAGCACCTTCGCGAGGAAAAGGCAATGGGACACGAAGCACC
GGACTGCAGATCTGCAGAGTGAGGAGTCGCAGATCTTCGCCGCAAAGAGT
CGAGAAGACGCGGTGCCCGACAGGCAGCTTTCTAGACATCGTGGCGCCGG
CCAGGTTAAGTGGCCTATCTAATCTATCCAAATCTAATCACTAGCCTA
UFO06224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr8-RB | 4837 | CG32600-RB | 916..1942 | 9..1019 | 4715 | 98.2 | Plus |
| dpr8-RA | 4958 | CG32600-RA | 1037..2063 | 9..1019 | 4715 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14444316..14444527 | 227..438 | 1060 | 100 | Plus |
| X | 23542271 | X | 14425184..14425359 | 55..230 | 880 | 100 | Plus |
| X | 23542271 | X | 14454059..14454234 | 565..740 | 865 | 99.4 | Plus |
| X | 23542271 | X | 14459156..14459367 | 735..941 | 810 | 97.6 | Plus |
| X | 23542271 | X | 14452968..14453096 | 438..566 | 645 | 100 | Plus |
| X | 23542271 | X | 14408273..14408322 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:08:12 has no hits.
UFO06224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:28 Download gff for
UFO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr8-RA | 1030..2063 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:48 Download gff for
UFO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr8-RA | 1030..2063 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:02 Download gff for
UFO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr8-RA | 1030..2063 | 1..1019 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:02 Download gff for
UFO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14408266..14408321 | 1..57 | 93 | -> | Plus |
| X | 14425187..14425356 | 58..227 | 100 | -> | Plus |
| X | 14444317..14444527 | 228..438 | 100 | -> | Plus |
| X | 14452969..14453096 | 439..566 | 100 | -> | Plus |
| X | 14454061..14454229 | 567..735 | 100 | -> | Plus |
| X | 14459157..14459456 | 736..1019 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:48 Download gff for
UFO06224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14338350..14338560 | 228..438 | 100 | -> | Plus |
| arm_X | 14347002..14347129 | 439..566 | 100 | -> | Plus |
| arm_X | 14348094..14348262 | 567..735 | 100 | -> | Plus |
| arm_X | 14353190..14353489 | 736..1019 | 94 | | Plus |
| arm_X | 14302299..14302354 | 1..57 | 93 | -> | Plus |
| arm_X | 14319220..14319389 | 58..227 | 100 | -> | Plus |
