UFO06225.5prime Sequence
1083 bp (974 high quality bases) assembled on 2009-08-20
> UFO06225.5prime
CAGTCGACATGTTCTGCTCGCTGGCCCAGACGCTCTTCTGCGTCCTGCTC
ATACAGGGCGGCCTCTATGCCCTCCATCTGAGCGGAAACGGAAATGGCAA
CGGGAACGGGAATGGGAACGGCGAGAAGTCGCTGGGCGAAGCCAAGGCAG
TGCAGGTGCCCAGTCATCCCGTTGGACCCTCGACGGGAGTAGCCGCCGCC
TGGCAGACCGCACCCTCGCAGCAGCAGCAGCACCAACAGCATCCCGGAGG
ATCTCCGCCCGGCGGTGGATCCTCGCCGCATGGCCATCGGTCCGCCGCAG
CGGCCGCCTTCGATGCCACCACCGTGCGGCTGAACAAGGAGATAGCGGAT
ATGGCCCAGCTGGAGCGAGAGCGACTAATGCTCCTGGCCCGCGCCAAGCA
GACGGCGGAACAGCCGCCGGCGGGCAGTAATCATCGCGGTCATCCCTTCA
TTGCCGGCCGGATACAGATGCAGCCCAGCGAGGAGCTGGAAGTGGGCGAC
TATCCGGCGCTGTTGCAGCAGGCCGCACGGGGCTACATCTTCGGTAATGT
GCAGAAGCAACCACCGACGCCGGTTACCCTGGAACAGGATTATGAGCAGC
TGAGGGATCTGGAGAATAGACCCGTTAAATACTACGGAAGAGTGGTGCAG
CCAGCGGAGAGGGAGGAGCAGGTGGAGGCTCTCTACGAACCGCTGCACTC
GTTCGGCGACTTTGATGACTTCTCGGAACTGGAGCAGAACCGCAGAGCCG
CACTTGGGCGAGGATGAGTTGCTGCGTGAACTGGATGCCTATCAATATCA
CGGCCTGAGGACGAAACCCTTCCGGAGAATCCCTATCGCACGCTGGAGCA
ATTGGAGCTGGGTGCACCCGACTCCCTGCAGCAGCTCTTCGAGCAGGACA
GGAGCAGCGAGATGCCCCCTTCAAGGCGATGCACACCGGCAAATCCACAA
CCCGGGCACTACAACATAGGTGCAGCAAGTGGGCGAGGAACGAAATGGCC
AGGCATTGCCATAATCTGGAGGCGGAAAGCACTGCAGCGCCGATCTCGCC
AGCCTCAGCCCAAGGCATGCAACATGCGTCGCC
UFO06225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jeb-RB | 10378 | CG30040-RB | 1281..2334 | 9..1046 | 4860 | 98.3 | Plus |
| jeb-RA | 4455 | CG30040-RA | 794..1847 | 9..1046 | 4860 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12117028..12118060 | 1028..9 | 4555 | 98.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2373 | 218..243 | 112 | 92.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2376 | 218..243 | 112 | 92.3 | Plus |
UFO06225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:40 Download gff for
UFO06225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jeb-RA | 813..1875 | 9..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:42 Download gff for
UFO06225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jeb-RA | 794..1856 | 9..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:31 Download gff for
UFO06225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jeb-RA | 794..1856 | 9..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:31 Download gff for
UFO06225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12116998..12118060 | 9..1053 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:42 Download gff for
UFO06225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8004503..8005565 | 9..1053 | 98 | | Minus |
