UFO06226.5prime Sequence
1124 bp (1008 high quality bases) assembled on 2009-08-20
> UFO06226.5prime
CAGTCGACATGACTGCCGCCAAAAGACGTGCGAGCAGCAGCAACAGCAGC
GGCAGCAGCAACACTAGCGGCAGCAGTAATGGCAACGAGCAGCACTCCCA
GCAGCAACATCTGCAGCTGCAGCAGCAGCAACAGCAGCATGCCCAGCCAA
ACGAGTACCAACAGTTGCTGCAGCATCCCCACCATCACTATCAGCAACAC
TACAGCGGCAACAACAACACCAGCGGCAACAACAGCAATAGCAGCAACAC
GCAGCAATACCACCAGAGACAGCAGCAACATCAGGCGACATTGCGCGACT
GTTCCGTCAAATTGCCGCTGGATATCCTATGGCTACCGAAATCGGCAATG
CGGCCGGCGGGTCCTGATACCTCGCCCACGGACTGCATCCTGGTGGTGGG
CGTTTCCCGTCCAAAATTGGCCGTCGTCTTCCTTACGGTCATGTTGATCT
CTCTGTTCCTCACCTTCCATGTCCTGTACGATAGTGCCGTATACAATATC
CAAGCGGCCCAGGCTGTCCACGAAAGGCATCGTCTATCTATGACCGCCTC
CGCATCGGCTCTGGCATCCTCCTCCTCATCGTCGTCCAATTCCGGCTCCT
CCTTCTCCTCCGCCGGTGGCGCCTCCAATCATCTGCCCGTGTTCGTAAAG
CCCGTGCCCAGCTCCAATCAGCTCAGCCATCCCATGGTTTTTCCCTCCAG
CCGTGTGCACTTTCCAAAAACCAGTCGACGGTTGCCGCAGCACTCATCAT
CGGTGTGCGAAAATGTGGTACACGGGCGCTGCTGGAGATGCTCTACCTAC
ATCCGCGGATCCAGAAAGCCGGCGGTGAGGTGCACTTCTTCGACCGGGAC
GAGAACTACCTGAAAGGTCTGGAGTGGTACCGCAAGAAGATGCCACATTC
GTTCCGTGGCCAGATAACCATCGAAAAGAGTCCCAGCTACTTTGTGTCGC
CAGAAGGTGCCGGAACGTGGTGCGGGCCATGAATGCAGCATCAAGCTGCT
CCTGATTGTCCGGGAGCCGGTGACCCGGGCCATTTCTGACTTAACGCAGC
TGCGTAGCATGCGGCCACCGCCATTTTGCGTTGGGCGAAAAAGATCACGA
GTCCGAGAAGTTTAGCTGGCAGAG
UFO06226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs3st-A-RB | 5724 | CG33147-RB | 1408..2510 | 9..1107 | 5205 | 98.6 | Plus |
| Hs3st-A-RA | 5570 | CG33147-RA | 1408..2510 | 9..1107 | 5205 | 98.6 | Plus |
| CG15772-RB | 1691 | CG15772-RB | 629..791 | 113..284 | 185 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18748051..18748462 | 329..740 | 2060 | 100 | Plus |
| 2R | 25286936 | 2R | 18745917..18746236 | 9..328 | 1600 | 100 | Plus |
| 2R | 25286936 | 2R | 18748726..18748940 | 740..954 | 1060 | 99.5 | Plus |
| 2R | 25286936 | 2R | 18750801..18750926 | 955..1079 | 425 | 94.5 | Plus |
Blast to na_te.dros performed 2014-11-28 19:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..7000 | 33..287 | 390 | 67.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1129 | 210..284 | 177 | 73.3 | Plus |
UFO06226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:39 Download gff for
UFO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-A-RA | 1393..2482 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:37 Download gff for
UFO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-A-RA | 1408..2497 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:22 Download gff for
UFO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-A-RA | 1408..2497 | 9..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:22 Download gff for
UFO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18750803..18750924 | 957..1076 | 94 | -> | Plus |
| 2R | 18748051..18748462 | 329..739 | 99 | -> | Plus |
| 2R | 18745917..18746236 | 9..328 | 100 | -> | Plus |
| 2R | 18748726..18748941 | 740..956 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:37 Download gff for
UFO06226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14636231..14636446 | 740..956 | 99 | -> | Plus |
| arm_2R | 14638308..14638429 | 957..1076 | 94 | -> | Plus |
| arm_2R | 14633422..14633741 | 9..328 | 100 | -> | Plus |
| arm_2R | 14635556..14635967 | 329..739 | 99 | -> | Plus |
