UFO06227.5prime Sequence
1130 bp (1003 high quality bases) assembled on 2009-08-20
> UFO06227.5prime
CAGTCGACATGAAACCGGAAAATCGGCATGAGTCGTACAATGCAAAGTGC
GGGACACTAGACGGAGCCGAACCGTTGTATCATCAACAGCGCAGCAACAG
AATGGACGTCTACCAGATCGACGATGGATTCCACTCGGACGGCGGCACCG
AGACTCCGCCGCCGTCACCCAGTTCTGGGTCATCGATCGCCTCGACCTCG
GACCACGGATCGCTGGAGAGCGTGGACACTGGGGGGACGCAGCGGCTGGC
CGTGCTATCGTTCGAGCAGGTGAGCAAACTGCACGACGTCATGGACGAGA
AGGTGGCCATCCATGGGCGCGGCAATTTTCCCACACTGGAGGTGAAGCTC
AAGGATCTGGTCAACCTGGTGCGCCGCAAGCTGGAGGCGGAGGTGAACGC
CGGCGGCGCCGGGGTGTTAGTTAAGGACATCCGTCTCAATGGCGGGGCAG
CTAGTCATGTTTTAGCCAGCGAGGATCAGCCGTACAATGACCTGGACCTG
ATATTCGCCATCGAGCTGAGTTCGCCACGCGTCTTTGACCGCGTCAAGGT
GGCGGTGCTCAACACCCTGCTGGACTTGATGCCCGAGGGCGTCTGCAAGC
GACGCATCTACACGTGCTCCCTGAAGGAGGCCTACGTGGGCAAGATGGTC
AAGGTGAACAACAACAATGACGGCGATCGCTGGTCCCTCATTTCGCTGGG
CAACTCGCCGGGCCACAAGAACGTCGAGCTGAAGTTCGTGGACACGATGA
GGCGCCAGTTCGAGTTCTCGGTGGACTCGTTCCAGATTGTGCTGGACTCG
CTGCTGCTCTTCTACGACTGCGCCGCTCTGCCCATCTCGGAGAACTTCTA
TCCAACGGTGGTCGGCGAATCGGTCTACGGGGACTTCCAGAGGCACTCTA
CCATTTGCAAAAGAAACTGATCTCCACGCGTCAGCCGGAGGAGATACGAG
GCGGCGGCCTGCTCAAGTACTGCAATCTATTGGTGCGTAACTACAAGGCG
TCGAATCGCAGCTCATCAGGACCCTGGAGCGCTACAGTGGCTCGCGCTTC
TTCATCGATTTCCCGGCTCATACGCGACCCCAGCTGGAGCTACTGCGTAC
ATTCTGGGGCGTCGATGAGACGCGCGATAC
UFO06227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45093-RB | 4996 | CG45093-RB | 805..1929 | 9..1119 | 5205 | 98.3 | Plus |
| CG30497-RB | 4996 | CG30497-RB | 805..1929 | 9..1119 | 5205 | 98.3 | Plus |
| CG45093-RD | 5320 | CG45093-RD | 417..1504 | 46..1119 | 5020 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7740900..7741922 | 1066..46 | 4925 | 99.2 | Minus |
| 2R | 25286936 | 2R | 7758035..7758073 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:24 has no hits.
UFO06227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:38 Download gff for
UFO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30497-RB | 637..1775 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:27 Download gff for
UFO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30497-RB | 798..1936 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:27 Download gff for
UFO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30497-RB | 798..1936 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:27 Download gff for
UFO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7740828..7741920 | 48..1125 | 97 | <- | Minus |
| 2R | 7758035..7758080 | 1..47 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:27 Download gff for
UFO06227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3628333..3629425 | 48..1125 | 97 | <- | Minus |
| arm_2R | 3645540..3645585 | 1..47 | 91 | | Minus |
