UFO06228.5prime Sequence
1108 bp (1003 high quality bases) assembled on 2009-08-20
> UFO06228.5prime
CAGTCGACATGTCTTCGAATGAGGCCTACCACGAGCCGGGTGCCGGTGGA
GATGGACCGGGCGGATCGTCTGGCGCATCCGGCGGAGGAAGTCAGCGGAG
CAACCAGCTGCACCACCAGCAGATACTCAACGAGACGACCTACCTGAAAC
CCGCCGCCAAGCAGGCCTACTTTAGCGACGAGAAGGTCCTCATACCCGAC
GATGATAGCACAAACGTGGGTTTCAGCTTTCGCAAGCTGTGGGCCTTCAC
GGGACCCGGTTTTCTTATGTCCATTGCGTATCTGGACCCCGGCAACATCG
AATCCGATATGCAGTCTGGTGCGGCGGCCAAGTACAAGATCTTGTGGGTC
TTGCTGTGGGCCACAGTCCTAGGTCTGCTCATGCAACGCTTGGCTGCAAG
ACTGGGCGTGGTTACAGGCCTGCATCTGGCCGAGATGTGCTACAGACAGT
ACAAGCGTCTGCCACGTTGGATACTGTGGATAATGATAGAGATAGCCATT
ATTGGATCCGACATGCAGGAGGTCATTGGCACGGCCATTGCCATATACCT
GCTGTCCAACAAAGTAGTGCCTTTGTGGGGCGGAGTGTTGATCACCATTG
TTGACACGTTCACGTTCCTGTTTCTGGACAAGTACGGTCTACGCAAGCTG
GAGTTCCTATTCGGCACCCTCATCACCATTATGGCTGTCTCATTCGGCTA
TGAGTACATTGTATCAGCCCCTAATCAAGGAGAAGTTCTCGAGGGAATGT
TTGTGCCCTGGTGCTCTAACTGCAATTCGAATGTGTTGCTGCAGGCCGTG
GGTGTCGTGGGTGCTGTTATTATGCCGCACAATCTCTACCTGCATTCCGC
CTTGGTTAAGTCCCGCGATATAGACCGTCGCCAGACAAAGAAAGTTAGTG
AGGCGATTTTTACTTCTTCATCGAGGCGTCGGTAGCCTTGTTTGTGTCTT
CATCATTAACCTGTTTGTGGTGGCTGTGTTGCCCATGGCATGTATGGCAA
ACTATAATATTGTGGTGGAAGTGTGTAAGACAGTCGATGTCGAGATGCAA
TGTCTTTTGTGACATGTAAATGACCGCGATCTCATGCATCTACCAAGGCG
AACTTCCT
UFO06228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mvl-RF | 2503 | CG3671-RF | 372..1462 | 7..1081 | 5040 | 98.3 | Plus |
| Mvl-RE | 2790 | CG3671-RE | 372..1462 | 7..1081 | 5040 | 98.3 | Plus |
| Mvl-RG | 2221 | CG3671-RG | 70..1159 | 8..1081 | 5035 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21058259..21058468 | 217..8 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 21058016..21058200 | 400..216 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 21057787..21057953 | 565..399 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 21056695..21056852 | 860..703 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 21057576..21057714 | 704..566 | 695 | 100 | Minus |
| 3R | 32079331 | 3R | 21056483..21056628 | 1001..859 | 580 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:39 has no hits.
UFO06228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:38 Download gff for
UFO06228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mvl-RC | 364..1462 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:28 Download gff for
UFO06228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mvl-RE | 364..1462 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:15 Download gff for
UFO06228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mvl-RE | 364..1462 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:15 Download gff for
UFO06228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21056483..21056626 | 861..1001 | 97 | <- | Minus |
| 3R | 21056695..21056850 | 705..860 | 100 | <- | Minus |
| 3R | 21057576..21057714 | 566..704 | 100 | <- | Minus |
| 3R | 21057787..21057951 | 401..565 | 100 | <- | Minus |
| 3R | 21058016..21058200 | 216..400 | 100 | <- | Minus |
| 3R | 21058261..21058471 | 1..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:28 Download gff for
UFO06228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16882205..16882348 | 861..1001 | 97 | <- | Minus |
| arm_3R | 16882417..16882572 | 705..860 | 100 | <- | Minus |
| arm_3R | 16883298..16883436 | 566..704 | 100 | <- | Minus |
| arm_3R | 16883509..16883673 | 401..565 | 100 | <- | Minus |
| arm_3R | 16883738..16883922 | 216..400 | 100 | <- | Minus |
| arm_3R | 16883983..16884193 | 1..215 | 98 | | Minus |
