UFO06229.5prime Sequence
1099 bp (999 high quality bases) assembled on 2009-08-20
> UFO06229.5prime
CAGTCGACATGCCGGAAGAAGAGCCGCCACAAAAGCCCATGGAGGAGGAG
GAGGATGATGATCAGGAGCAGGATCAGGATCAGGACCACGAACAGGATCA
GCACGAACAGGATCAGCAGCCCCAGTTAGCGCAGGGCGAGATACCCGGTC
AGCAACTGCCTGAGCAACCCAACCCCGATGTGCAGCCGCAACAGCCGGCC
GAGTCTGTGGTGGTCACCGAATTATCCGCAGAAGAGATGCGCGCCCGTCG
TCTTCGGACTTTGGCTGCCCGAAGTGGCATCCAGTGTGCCCTGGCGCCCC
TGACTACTACGCCACGGAAGCCGACCAACGTCTCTGGCGAGTCTCGACTG
GTACGTGAGGCCACGCCCGGCGAAAAGGAGGTATCGCTGCCCACTTCGGC
GCCCGCTTGGAGGGAACTGAGCGGAAAACCGGACATGGATGTGGAGATGA
AGTCGGTGGTCTCGACACCAATGCAAGATGTGGATATGACGACAGCGCTC
AGCCTGCCAACAGCCGAGGCCACCAAAAGGAGTGTGTTGCAGAGTTGCAA
GATATCCGCTGGAAATGCCGAGTTGTCCATTGAAACTGTAGTCGGTCCAA
AAAAAAGTGCGGATGAGCAAAACGAACAATTGCTCTCCCGCCTACTGAAT
GCCACGTGGAATGAGTACGGTAGCGGGTCCATCATTTGTGCCCAGAGTGC
CAGCTTCCTGGAGCAGCAGCCACACCGCAGATTCGACTTCGAGTGCATTG
TGGCCAATGTGCTCATGGAGGCTGTTTTGAAGATCTACAACGGTGAGCTG
ATCGAAGGAGATGGCGTTTCTGTTAAAGCGGACGATAAAGAGTTCTCCTC
TGCCAAGAAATTAAATCAGATGATACGGAGTACAGGAAATCCTTGCCACG
CAGTAGCCACCGGGGGGAGCAACTGCCAGCGGAGAAACTGCGGCTGCGGC
TGCTGGCGCATCTGGACCATTGAGCACTAGTAGCGAGGAGCTGGTACTTG
GGTGCTCCACATGCTAGCATCGTGCACCCCAACACCACGTGCTGCCTATT
TATCGTGCTACGACTATCGACGAGTGTCCGAGAGCGCTCACAGCCTGTC
UFO06229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9934-RB | 4357 | CG9934-RB | 477..1535 | 9..1052 | 4845 | 98.2 | Plus |
| CG9934-RA | 4759 | CG9934-RA | 767..1825 | 9..1052 | 4845 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13016927..13017663 | 969..235 | 3475 | 99.3 | Minus |
| 2L | 23513712 | 2L | 13017829..13018056 | 236..9 | 1140 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:05 has no hits.
UFO06229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:37 Download gff for
UFO06229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9934-RA | 760..1837 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:17 Download gff for
UFO06229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9934-RA | 760..1837 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:01 Download gff for
UFO06229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9934-RA | 760..1837 | 1..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:01 Download gff for
UFO06229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13017829..13018062 | 1..236 | 98 | | Minus |
| 2L | 13016819..13017661 | 237..1061 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:17 Download gff for
UFO06229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13016819..13017661 | 237..1061 | 97 | <- | Minus |
| arm_2L | 13017829..13018062 | 1..236 | 98 | | Minus |
