UFO06230.5prime Sequence
1130 bp (1027 high quality bases) assembled on 2009-08-20
> UFO06230.5prime
CAGTCGACATGCGTAAGAAGCAGGCGGATGAAATACCAGGCTTTCCATCA
CTGGACAACGATGCCGGCACCAGCGACCGGGGCGCCGACATTCTCAAGTC
CAAGTCCAAGAAGAACAAGAGTGGTGGATTCCAGTCGATGGGCCTGGGCT
TCGAGCTGATAAAGGGCATCACCAAGCGGGGTTACAAGGTTCCCACCCCC
ATACAGCGGAAAACGATTCCGCTGATCCTGGAGGGACGCGATGTGGTGGC
AATGGCCAAGACGGGCTCTGGCAAGACGGCCTGCTTTCTGATTCCGCTCT
TTGAAAAGCTACAGAGGCGCGAGCCCACAAAGGGGGCCCGTGCCCTGATC
CTGTCTCCGACGCGCGAACTGGCTGTGCAGACGTATAAGTTCATAAAGGA
GCTGGGCCGCTTTATGGAACTGAAGAGCATTCTGGTGCTAGGTGGCGACT
CCATGGACTCACAGTTCTCGGCCATACATACCTGTCCGGACGTAATTGTT
GCAACGCCAGGTCGTTTTCTTCATTTGTGCGTAGAAATGGACTTGAAGCT
AAATTCCATAGAGTACGTGGTGTTTGATGAAGCCGATCGACTCTTCGAGA
TGGGCTTCGGCGAGCAACTGAACGAAACGTTGCACAGATTGCCATCGTCC
CGGCAGACGGTCATGTTTTCAGCCACGCTGCCAAAACTGCTAGTAGAGTT
CGCCCGTGCCGGACTGAACGACCCAGTGCTCATTCGTTTAGACGTCGAAT
CCAAGCTCCCGGATGCGCTGGCTCTAAAGTTTCTGTACTGTCGACCAGAC
GACCGCTACACAGCACTTGTGGTTCTTCTTAAGTACGTTATTCCGGTGCA
GTCGCAAACCGTGGTGTTCGCCGGTACTCAGCACCATGTCGAACTCATTT
CGTACATACTTACTGAGGCTGGGATCTCCAACGCTCAGTCTACTCCAGCC
TGGATCCAGCTGCACGCAAAATAAACACCGCCAAATTTGTGAACAAAAGT
GTCCGTGCTAATAGTCACGACGTGCCGCGCGTGTATGACATCCAGTCTAG
ACTTGTGGTGACTGCACTCCGGGTAACGACTGTTGTCCACGGTAGTCGTG
CCTCGCTGTCCAGGACCGATCTATGAACCA
UFO06230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2694 | CG32344-RA | 66..1147 | 9..1076 | 5085 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 324049..324599 | 561..11 | 2755 | 100 | Minus |
| 3L | 28110227 | 3L | 323534..323997 | 1019..559 | 2190 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:38 has no hits.
UFO06230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:36 Download gff for
UFO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 63..1144 | 9..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:08 Download gff for
UFO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..1147 | 9..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:48 Download gff for
UFO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..1147 | 9..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:48 Download gff for
UFO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 323466..323994 | 562..1076 | 97 | <- | Minus |
| 3L | 324049..324607 | 1..561 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:08 Download gff for
UFO06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 323466..323994 | 562..1076 | 97 | <- | Minus |
| arm_3L | 324049..324607 | 1..561 | 99 | | Minus |
