UFO06231.5prime Sequence
1127 bp (1015 high quality bases) assembled on 2009-08-20
> UFO06231.5prime
CAGTCGACATGGTGGCCCAGGAGCAGCTCGTCCTGCTGCTCATGCTGCTT
GCCGGCTGCCGGGGTGGCGCCAACGCCATCTTGGATCCTGGCTGGGTGAT
TCCCTCCAAGGTGGAGCAGCTCATCGGCGGCGACTTTAATCTGAGCTGCA
CCCTCAACGAAGACTACTTTAACGGCAAGAGCGCCGAGGACTGCCCGGTG
GAGAAGCTGTACTTTACAGGCGGCGGCCGCGTCTACCGCGATTCCAAGCA
CATCCGAATCCTGAACAACACCACCATCCTGTTTAGCGACACGAATGCCG
TGGAGCAAGAGAACGACTACCACTGCATGTGCGACGAGTATGTGATCAAC
AAGTCAAAGGTCTACGTGGGCACCAGGCCGCTCCTGGTGCGCGACTTCAA
CTGCCTGGACTACGACTTCCAGTTTATGGTGTGCAACTTCACCCAGCCGC
CCAACACGGTCATCACCAAGTACAACATCAGCTACAACACCAACAACGAC
TGGCGATATAGCAACACACTGGACTGCAACTTCGACTCGGCGCCAGTGGT
CACCTGTAACCTAACCGACGACAACTACAAGCGCTTCAGCGAGACCTTCT
ACTTCCGACTGTCCATCTCCAATGCCCTGGGCCACGAGACGCAGCCGATC
ACGATCAATCACTTTGAGCGTCTGGTGCCGGCGCGACCTGGCCAGAACCT
GACCCTGCTCAACAGGACCGAGAGCTCCGTGTGCCTGTCGTGGGAGATGC
CCCGTCGGTCCAACTACAATCGCGGCCTGTGTGGCAGGTGCGCGTCACGC
CGCAAACTTTGAGCCCATCACGCGGCCCAGCTGGCGAAACCACACGCTGA
CCATCAAGGACACGCTCTGCCTCACGGAGCTGCCCTTCGCGGCTACACTA
CACGCTCTGGTGCGCGTGCGCGCACAACACACGCTCTGGAGCGAGCCATG
ATTTATGCGTCGCACGCTCGGCGCGCGCGCGCCTCTCGCGTCACTACGCA
GCTTCTTGTCTACTCGTCGGAAAGCTATGCGCTTCTACTGGAGCCCTGGA
GACCCGACTGACGACCGACTCGTACTCCATCAGCGATACCGCATCACGAA
AGCATGATCTGCCTCTCAGTTGATCCA
UFO06231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dome-RA | 4875 | CG14226-RA | 549..1674 | 9..1096 | 4690 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19682051..19682970 | 923..9 | 4335 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 20:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2427..2515 | 452..537 | 131 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2465..2625 | 433..596 | 128 | 58.3 | Plus |
| Porto1 | 4682 | Porto1 DOC5 4682bp | 425..468 | 476..519 | 112 | 72.7 | Plus |
UFO06231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:35 Download gff for
UFO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dome-RA | 540..1625 | 1..1057 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:36 Download gff for
UFO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dome-RA | 542..1627 | 1..1057 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:05 Download gff for
UFO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dome-RA | 542..1627 | 1..1057 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:05 Download gff for
UFO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19681892..19682977 | 1..1057 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:36 Download gff for
UFO06231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19575925..19577010 | 1..1057 | 96 | | Minus |
