UFO06235.5prime Sequence
1123 bp (1023 high quality bases) assembled on 2009-08-20
> UFO06235.5prime
CAGTCGACATGGCTGAGAGCAATGTACCGCTACGAGATTTCGACGAAGAG
AGCGAAACGGATTCGGAGACCGAATTGCTCATACGCCGCGATGTACCGAG
CGGTAAACAGAACAACAACAACATTAGGGGGCGACGCAAAAGCTCCATGG
GCTACAGCGGCGTCGACGCCGGCGCTGGCAGCTCTGCCGCCGGCGGCGGA
GGCAGCTTTCTGGGCAATCTTTTCGGATCCAACAGTTTTGGCTCTGCCGC
CGGCCAGATACGTTATAGAAATGAGCGGAGTCGCGAGCGCGCCAAACACT
CAAACGGTAGCTACAGCAGCATTTCGAAACTGGCGCAATTAACGCACACG
TCATCGGGCGTCGCGGGGGCGGGATCGATCGGTGGCGGTGGTGGTGGGAG
TGGCAGTGCCACCGGCATTAAAGTAACCACTGGCGATGGCAGTGTAGCGG
CATCTGGAGGATCTGCTGCCACGGGGGATCTCAGCAATGGCGCTACGCAC
AGCACAACCGTCATAGATCCGGAAAATGGCTCATCCACGGTCTTCTACCA
GCACAATCGGCGTAAAAGCAAGAGTCGCAGCATTGGCAACGTCTGCAAGT
TGTGCCTCTGCAGCTGCTGGCGAAAATGGTTCCGGCCACGGGAGCTGAGA
GCCCGCACCGTAAATCTCGGACGGGTCAATACGGAGAAGTTCCCACCGAA
CGAGATCCGGAATCAGAAGTACAACTTCATCACCTTCCTGCCGCTGGTGC
TGTTCGAGCAGTTTCGCTTCTTCCTCAACTTGTACTTCCTGCTGATGGCG
CTGTCGCAGTTCATTCCGGACATCCGGATCGGTTACCCGTACACCTACTG
GGGTCCGCTCGGCTTCGTGCTAATGGTCACCATTTGCCGAGAGGCGGTCG
ACGATCTGCGTCGGCATCAGCGGGATCACGAGGTAAACTCGCAGAAGTAC
AGAGACTGTCGTCCACAACATCAGCGGCTACGAAATGGTTCCAGCTCCAG
CTGAAGGTCGGTGACGTCATAATCGTGAAAAGAACGAGCGCGTGCCAGCG
GATCTGATTCCTGCTGCGCACACGATCGGAGGGATCGATTTTGTTCGTAC
GACACTGGATGGCGAACGACTGG
UFO06235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31729-RB | 4912 | CG31729-RB | 691..1808 | 9..1115 | 5250 | 98.7 | Plus |
| CG31729-RD | 3999 | CG31729-RD | 1..895 | 232..1115 | 4135 | 98.3 | Plus |
| CG31729-RC | 3963 | CG31729-RC | 192..707 | 611..1115 | 2240 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13290687..13291291 | 9..613 | 3025 | 100 | Plus |
| 2L | 23513712 | 2L | 13297616..13298080 | 611..1071 | 2030 | 98.7 | Plus |
Blast to na_te.dros performed 2014-11-28 19:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 484..532 | 747..795 | 110 | 69.4 | Plus |
UFO06235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:41 Download gff for
UFO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RB | 682..1799 | 9..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:47 Download gff for
UFO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RB | 682..1799 | 9..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:38 Download gff for
UFO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RB | 691..1808 | 9..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:38 Download gff for
UFO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13290687..13291291 | 9..613 | 100 | -> | Plus |
| 2L | 13297619..13298131 | 614..1115 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:47 Download gff for
UFO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13290687..13291291 | 9..613 | 100 | -> | Plus |
| arm_2L | 13297619..13298131 | 614..1115 | 97 | | Plus |
