UFO06237.5prime Sequence
1091 bp (974 high quality bases) assembled on 2009-08-20
> UFO06237.5prime
CAGTCGACATGCCAATAATCACGGCCACGACAACGTCGACAGCCGGCGGA
GGAGCAGGTGTGGCGGCCAGGGGCGTGGCCACCGCCAAGTCTCCCACCGA
TTACCTAATGCTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGC
ATTTCAACAGCAATCACTTCTATCAGCAACAACAGCCGCAACAGTTGGCG
CCTCTGAATGCTTCCCACCAACACCAGCACTCCCATCCACATCCACATCC
ACATCCTGTTGCCGCCGCGACCAGTTTTGCAACATTTAACGGAAACTCGA
ATCTAAATTCTAGCCTTGCCAACGGAAGCAGCAGAAAATTCAATTGCAGT
CGTGACAATGTGGACGATGGTGGCGATGCCGGCGAAATGGCAGCCGCTTC
CCAGACACTGTCCTCGGCTGGCACAGATGTGGTTGGTAACGGGAGCGGGC
ATGGCAATGGAACTGTAACTGGGAACGGGGAGAAGTCTGGCGGTTTAGCG
CCACCAGGTGGCCACCATCTACGTCCGCCACCGCCGCCGGCACTTAAGAA
ATCCGCCTCAGCAGTGATTGGAAATTCAGCTTCACGCGAGGATGTTGCCT
CGTTGAGTGGCACCTCCTCGCTAAACAGCCAGATGTCGGTGCATAATCAG
TTCATCTCCGGATTGCCAAGCAATGGCATTGGCAGCAACGGAGTGCACGG
AGGAGCAGCCACCGGACGAGGCGGTCCACCCAACAGCATTCTCAAGGGTA
GCAAAGAGAACCTGCTGCAGAACACCTACTACAACGGCGAGACGGGGGAC
AGCAGCCTTGGTAGCGAGTGCGGAGTTGGAGATGTCCAGCATCAGAACCA
CGAGAGTCACGATGATCCGGGCGACGGATTGGGACCACTTCCGCCCAAAT
GGGAACAGCATACACTGAACGCGGCGAGCTCTACTCATCGATCACAACAC
GGGCACCTCTCACTGCTGATCGCGGTCTTCAGGTACAGAAAAGTCACTGG
AGATGCTGCAGACGACTGCTACGATGCAAGATCGAGACTCCATGATGATG
TACTTTATCGATCGTAACCGGCGAGCATACGAGACGAGCTG
UFO06237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Magi-RC | 4475 | CG30388-RC | 455..1532 | 9..1063 | 4810 | 97.6 | Plus |
| Magi-RB | 4706 | CG30388-RB | 686..1763 | 9..1063 | 4810 | 97.6 | Plus |
| Magi-RA | 5003 | CG30388-RA | 983..2060 | 9..1063 | 4810 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21138226..21138973 | 756..9 | 3740 | 100 | Minus |
| 2R | 25286936 | 2R | 21132735..21132916 | 935..755 | 860 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2539 | 12..235 | 213 | 57.3 | Plus |
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 545..595 | 701..651 | 111 | 68.6 | Minus |
UFO06237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:31 Download gff for
UFO06237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Magi-RA | 1284..2242 | 9..965 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:40 Download gff for
UFO06237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Magi-RA | 983..1941 | 9..965 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:04 Download gff for
UFO06237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Magi-RA | 983..1941 | 9..965 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:04 Download gff for
UFO06237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21132639..21132662 | 942..965 | 100 | <- | Minus |
| 2R | 21132728..21132914 | 757..941 | 98 | <- | Minus |
| 2R | 21138226..21138973 | 9..756 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:40 Download gff for
UFO06237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17020144..17020167 | 942..965 | 100 | <- | Minus |
| arm_2R | 17020233..17020419 | 757..941 | 98 | <- | Minus |
| arm_2R | 17025731..17026478 | 9..756 | 100 | | Minus |
