UFO06241.5prime Sequence
1076 bp (963 high quality bases) assembled on 2009-08-20
> UFO06241.5prime
CAGTCGACATGTTCGCTGGAGCATATGCACCCAACGCTGGGGGCGTTCAG
CAGCACACTGGCGGCGGTTACTATGGCAATGGTGCCGCAGCAGGCGCTGG
CGGTAGCGGCAACGGGGCCCCACGCCACGAGCGTCAATACTATCCGCGCG
GCAATTTCGGCGGTGCCGCCGGGGGAGCTGGCATCAATGGAGCAGCCACT
GCGGCTGGAAGCATGCACTTTGGTCAGCCCTATGGCGTGATGACCTATGG
CATCCAGAATGGTCTGGGAATGGGAGCCGCCGGTTCTGGTGGCGGCAATC
CGTATCGCCAGCAAAACGGTGTTGCATTCGCCGGTAATGGACTTGGAGGA
GGCGCCGGTGGCGGATCCGGAGGATCTGGCGGATATGGAGGACAGCGTGG
CAAAAATCCAACCTACGCACAGCGTTATCAGAAGCCGAACAACGGCGCCG
GAGTTGCTGGTGGCTACCAAAGCAATAACTACAATGCTGCCGCCTTAGGC
ATGCTTTCCAAAGAGGAGCGCGCCGAGATCCAACGTGAAAAGGCCAAAAA
TCCCGGCCGAAATTTAGTGAAACCCAAGTGGGAGAACCTCGAGCCCTTCC
TCAAAGATTTCTACAACATTCATCCGAATACACTGGCCAAATCAGAGCAG
CAGGTGGCCGAGATCCGGCGCGAACTGGAAATCACCGTGTCTGGCAATGA
ACTACCACACCCGGTGGTCAGTTTCGAGGAGAGCTCGCTGCCCGCTCACG
TCATTGAAGAGATGAAGCGCCAGGGATTCACCAAGCCCACTGCTATCCAA
TCGCAGGGTTGGCCCATTGCCTTAAGTGGCCGCGATTTGGTGGGCATTGC
CCAGACCGGTTCAGCAAGACGCTGGCATACATGCTGCCTGCCATCGTGCA
CATTGGCATCAGCCGCCAAAATTCGCGGCGAAGACCATTGCTTTTATTGT
TGTCCCCACCCGGGAGCTGTCCAGCAGATTCAATCTGTCGTGCGAGACTA
TTGGACATCTGTGCAGACAGAGATCGTCAACTTGCATCTTGGGGTCATCG
AGTGCGCAAGCTCGATCTGACGCGGC
UFO06241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10777-RC | 6384 | CG10777-RC | 523..1562 | 9..1040 | 4820 | 98.3 | Plus |
| CG10777-RB | 8365 | CG10777-RB | 523..1562 | 9..1040 | 4820 | 98.3 | Plus |
| CG10077-RD | 3420 | CG10077-RD | 647..780 | 771..903 | 225 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7929291..7930302 | 1015..9 | 4600 | 98.3 | Minus |
| 3L | 28110227 | 3L | 6954567..6954655 | 859..771 | 205 | 82 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:35:50 has no hits.
UFO06241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:30 Download gff for
UFO06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10777-RB | 487..1549 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:41 Download gff for
UFO06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10777-RB | 514..1576 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:14 Download gff for
UFO06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10777-RB | 514..1576 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:14 Download gff for
UFO06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7929249..7930306 | 1..1051 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:41 Download gff for
UFO06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7823282..7824339 | 1..1051 | 97 | | Minus |
