UFO06243.5prime Sequence
1079 bp (981 high quality bases) assembled on 2009-08-20
> UFO06243.5prime
CAGTCGACATGGATCGACGCCTGAGACGCCCGCGTCGCACGGAAGACGTG
TCCAGCGGTCCACTTCTGGCCCAGTCCAAGCAGCCCAGCCTCCTGCCGGT
GACCCGACGTACGGGCTCCGTGACAGCTGCGGGTGCCACCGCCACCGCCA
CCGCCACCGCTGGTCCCGCCACCCGGACACGTGCCTCCCCGTCACGCAAC
AAGGTCGTCGCACCGCCCTCGCCCGATCTTGGCCCGCGCACCCGTCGCTC
CAGCCGGCCGAGGTCGTCGGTGGGTCCGCTGACCGGATCGGGATCTGGTT
CCTCGCTGCCCATCAAGGCCGCCATCAAGGCACGCACACCCATCCCAGAG
GTTTCCGAGGTATCATCGCCTATTCGTTTGTCAACCAGCAATCTGCCCAT
GACATTGACCACCAACACATCCAGCGGCGCACCGAACAAAGCATTTAACA
CAAGCTCCGTGAACAGCGGCAACAGCTTCAGCCGTACCACTACCAGCAGC
ACCACCACAACCACGGAGCGCATCGAGATCCGTGCCGAGGGAGACGGCGA
GGTGGACACGGATTCCATTCGCAAACGCATAACCGAACGACTGCGCAGAT
CGGTGTCGAAGACAATCTCAAATCTAGCTGGAACACCAGTGACAAACACC
GAAGAGGGCAGTCGTTATAGTAGGAGTGTGTCCCGATCCGTCTACGACGA
TGAGAAGTCCTCCAAGCGTAGTTACTCTACGGGTGAAGAGGATATTGATG
AGGAGGATGAATTGGAGGAGGATCAGTTCCGTAGTTTCAATGTAACCCGT
AAATCGGCCACACCGGCGGAAATATCCTGCCGTCAGTTGAAGCTCCTAGA
GAATTTGGCGGTTGGCTAGGCGCCTTCTGTTCTGCTACTTCTGCCCACCG
CGTCTACTATTTGACATGGAGCTGTACGCAGAACGCCTGTCAGTTTAAGC
ACTCATCTGGGTATACTACTGATGTACTACTACGCGCAGTGTCAGCCACG
ATGTGTGCTTGCGCTATCAGGGTGTATTCTGCTGTGATGCTACAGACAGT
CACTCACCGGGAACTAAGTTAATGTTACG
UFO06243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LBR-RC | 2792 | CG17952-RC | 243..1215 | 8..971 | 4650 | 99.1 | Plus |
| LBR-RA | 2701 | CG17952-RA | 152..1124 | 8..971 | 4650 | 99.1 | Plus |
| LBR-RB | 2719 | CG17952-RB | 170..1142 | 8..971 | 4650 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21721856..21722478 | 358..971 | 2705 | 98.2 | Plus |
| 2R | 25286936 | 2R | 21720976..21721329 | 8..361 | 1770 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7368..7423 | 462..516 | 124 | 71.4 | Plus |
UFO06243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:29 Download gff for
UFO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RC | 213..1213 | 1..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:37 Download gff for
UFO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 163..1163 | 1..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:58 Download gff for
UFO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 163..1163 | 1..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:58 Download gff for
UFO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21720969..21721327 | 1..359 | 98 | -> | Plus |
| 2R | 21721858..21722478 | 360..971 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:37 Download gff for
UFO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17608474..17608832 | 1..359 | 98 | -> | Plus |
| arm_2R | 17609363..17609983 | 360..971 | 98 | == | Plus |
