UFO06244.5prime Sequence
1080 bp (1028 high quality bases) assembled on 2009-08-20
> UFO06244.5prime
CAGTCGACATGCCTTGCCCATGCGGAAGCGGATGCAAATGCGCCAGCCAG
GCCACCAAGGGATCCTGCAACTGCGGATCTGACTGCAAGTGCGGCGGCGA
CAAGAAATCCGCCTGCGGCTGCTCCGAGGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC
CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATT
CACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAA
CAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCAT
ACGAAATTCCGGATGAGCATTCATCAGCGGGCAAGAATGTGAATAAAGGC
CGGATAAAACTTGTGCTTATTTTTTCTTTACGGTCTTTAAAAAGGCGTAA
TATCCAGCTGAACGGTCTGGGTTATAGGTACATTGAGCAACTGACTGAAA
TGCCTCAAAATGTTCTTTACGATGCCATTGGATATATCAACGGGGGGATA
TCCAGGGATTTTTTTCTCCATTTTAGCTTCCTAGCTCCTGGAAGATTCAA
TACCTCGTTAGATAATTATACGAGGTAAGA
UFO06244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MtnA-RB | 700 | CG9470-RB | 126..245 | 9..128 | 600 | 100 | Plus |
| MtnA-RA | 329 | CG9470-RA | 126..245 | 9..128 | 600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9783862..9783960 | 128..30 | 495 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 697..764 | 123 | 68.1 | Plus |
UFO06244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:28 Download gff for
UFO06244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnA-RA | 119..255 | 1..138 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:33 Download gff for
UFO06244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnA-RA | 118..254 | 1..138 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:00 Download gff for
UFO06244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnA-RA | 118..254 | 1..138 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:42:00 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:17:33 has no hits.
