UFO06247.5prime Sequence
1107 bp (1010 high quality bases) assembled on 2009-08-20
> UFO06247.5prime
CAGTCGACATGGACAAACCAGTTGTGTGGGCACGCGTCATGAAGGTTCTG
GGCCGCACCGGCTCCCAGGGTCAGTGTACCCAGGTGAAGGTCGAGTTCCT
GGGCGAGCAGAACCGCCAGATTATCCGAAACGTGAAGGGACCAGTTCGCG
AGGGCGACATCCTGACCCTTTTGGAATCCGAACGTGAAGCCAGGAGGCTG
CGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAG
AAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCA
GGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAAT
AGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGA
AACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTC
AGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCA
CCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATC
AGCGGGCAAGATGTGATAAAGGCCGGATAAACTTGTGCTTATTTTTCTTA
CGGTCTTAAAAGCGTAATATCAGCTGACGTCTGTATAGTACATGAGCACT
GACTGAAATGCTCAATGTTCTTACGATGCATGGATATATCACGTGCTATC
ATGATTTTTCTCAATTAGCTCTAGTCTGGAAGATCCTACCTCGTAGCAAA
CTTACGG
UFO06247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS28b-RB | 972 | CG2998-RB | 86..282 | 7..203 | 985 | 100 | Plus |
| RpS28b-RA | 520 | CG2998-RA | 86..282 | 7..203 | 985 | 100 | Plus |
| RpS28a-RA | 304 | CG15527-RA | 93..242 | 54..203 | 330 | 81.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9554708..9554904 | 7..203 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 30022407..30022556 | 203..54 | 330 | 81.3 | Minus |
Blast to na_te.dros performed 2014-11-28 23:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 772..839 | 123 | 68.1 | Plus |
UFO06247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:32 Download gff for
UFO06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS28b-RA | 83..291 | 1..211 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:31 Download gff for
UFO06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS28b-RA | 79..287 | 1..211 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:32 Download gff for
UFO06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS28b-RA | 79..287 | 1..211 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:32 Download gff for
UFO06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9554701..9554904 | 1..203 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:31 Download gff for
UFO06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9448734..9448937 | 1..203 | 98 | == | Plus |
