UFO06249.5prime Sequence
1087 bp (1000 high quality bases) assembled on 2009-08-20
> UFO06249.5prime
CAGTCGACATGAGATCGCATGTGGCCGTTTACAGGGCGCCAGAATCAGCA
GCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATACCACCAGCA
TCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGTGTACAGGT
TGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAGCTCAGTCG
GCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAATCAGCAGCG
GATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTCCAGTCACT
TGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCCTTAAAACA
TGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTGGCTGTGCA
TGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCATCTCCAGC
AACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATCCTGTGACC
AACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCTTTCAAGTT
GGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACCACCGGTGC
TCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGGATCAGGCC
ACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCCAGGAAGCG
ACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAAAATTGAGG
CGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACACCGCGAAT
GCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCATGATCATAC
GCACGGAGTCTGCTTCTGCCGAGAATGTGACCCACTTCGTTCGCTTTGGG
ATTACCCGCTCCGGCGATCGCTTTCCGATGCCTCTTCCAGCGAGCCAGAG
CGAAGCCGAGAGTCCTCCCTCCTCAACGTCATCCACTCACTCGGACAGCT
CTGCGATAGCTCCATTTGTAGCAGAGCTGCCAGCTCATGGCCTGCAGGAG
GAGAACACGAGATCCCTCCATTCCGGCGAATGCACCG
UFO06249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-RA | 4088 | CG17786-RA | 260..1317 | 9..1058 | 5015 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24217443..24218459 | 1022..9 | 4850 | 99.1 | Minus |
Blast to na_te.dros performed 2014-11-28 21:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2463 | 414..537 | 172 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6825 | 386..510 | 140 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2424 | 436..506 | 139 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6857 | 423..522 | 138 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6809 | 433..518 | 134 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6885 | 423..531 | 133 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1180 | 417..512 | 127 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2727 | 447..569 | 121 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2738..2832 | 403..492 | 120 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2392 | 436..510 | 116 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6528..6571 | 433..476 | 112 | 72.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1088..1154 | 405..471 | 110 | 62.7 | Plus |
UFO06249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:26 Download gff for
UFO06249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 254..1319 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:39 Download gff for
UFO06249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 256..1321 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:12 Download gff for
UFO06249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 256..1321 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:12 Download gff for
UFO06249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24217398..24218463 | 1..1061 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:39 Download gff for
UFO06249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20043120..20044185 | 1..1061 | 98 | | Minus |