Clone UFO06249 Report

Search the DGRC for UFO06249

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:62
Well:49
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG17786-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06249.5prime Sequence

1087 bp (1000 high quality bases) assembled on 2009-08-20

> UFO06249.5prime
CAGTCGACATGAGATCGCATGTGGCCGTTTACAGGGCGCCAGAATCAGCA
GCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATACCACCAGCA
TCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGTGTACAGGT
TGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAGCTCAGTCG
GCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAATCAGCAGCG
GATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTCCAGTCACT
TGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCCTTAAAACA
TGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTGGCTGTGCA
TGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCATCTCCAGC
AACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATCCTGTGACC
AACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCTTTCAAGTT
GGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACCACCGGTGC
TCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGGATCAGGCC
ACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCCAGGAAGCG
ACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAAAATTGAGG
CGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACACCGCGAAT
GCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCATGATCATAC
GCACGGAGTCTGCTTCTGCCGAGAATGTGACCCACTTCGTTCGCTTTGGG
ATTACCCGCTCCGGCGATCGCTTTCCGATGCCTCTTCCAGCGAGCCAGAG
CGAAGCCGAGAGTCCTCCCTCCTCAACGTCATCCACTCACTCGGACAGCT
CTGCGATAGCTCCATTTGTAGCAGAGCTGCCAGCTCATGGCCTGCAGGAG
GAGAACACGAGATCCCTCCATTCCGGCGAATGCACCG

UFO06249.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-RA 4088 CG17786-RA 260..1317 9..1058 5015 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24217443..24218459 1022..9 4850 99.1 Minus
Blast to na_te.dros performed 2014-11-28 21:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2463 414..537 172 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6825 386..510 140 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2424 436..506 139 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6857 423..522 138 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6809 433..518 134 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6885 423..531 133 64 Plus
roo 9092 roo DM_ROO 9092bp 1082..1180 417..512 127 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2727 447..569 121 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2738..2832 403..492 120 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2392 436..510 116 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6528..6571 433..476 112 72.7 Plus
roo 9092 roo DM_ROO 9092bp 1088..1154 405..471 110 62.7 Plus

UFO06249.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:26 Download gff for UFO06249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 254..1319 1..1061 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:39 Download gff for UFO06249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 256..1321 1..1061 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:12 Download gff for UFO06249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 256..1321 1..1061 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:12 Download gff for UFO06249.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24217398..24218463 1..1061 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:39 Download gff for UFO06249.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20043120..20044185 1..1061 98   Minus