UFO06250.5prime Sequence
1090 bp (960 high quality bases) assembled on 2009-08-20
> UFO06250.5prime
CAGTCGACATGCTCTGCCCGGGGGAAAATGCCTATAATGCAAATGGCCAA
ACGGGTTTCACAGTCAAGGTCGTCGCTTCCGCCCAGCGACGCTCGAAGCC
ACAACCAACAGCGCGAATTCCCAACGCCCACCGCTTACCCAGTTTGTGCA
TCTGGATGATGGTGGCGCTTATGATTATGTCGTCGTCGCTGGACGCCCTG
GTCATTGACAATGATGGAATAGTCGGCAACCAAACTCGGCATCGTCGCTC
GACCTCCGGCGCAGCCAGTTGCATGCAAGATGCACGCTTCTACCGCAACC
CCAACAGGCCGGTCCACAAGATCTGGACGAACAGCGAGTGCGCCAAGTAT
TTCCTCTGCCTCGACGGTGAGGTGTTCGAATTCAAGTGCTCCGAGGGATT
GCTCTTCGATGTGGTGCGTCAGATCTGCGACTTCAAGGCGAATGTGGACA
ATTGCGATGTCAGCGCGGAGACGCCGGCTCCAAAACCACTACTGGAGATG
GCCGACTGTGCGGATGAATACCAGTTGGGCTGCGCCGATGGTACCTGCCT
GCCGCAGGAGTACTTCTGCGATGGTTCGGTAGACTGTCCCGACGGCTCCG
ACGAAGGCTGGTGCGATGTGGAGCACGATCCGAATGCGGCTGGTGCCTGT
GATCCGCGAAAGTGCCATTTGCCGCAGTGCTTCTGCTCGAAGGATGGCAC
CCAGATACCCGGCAGTCTTCCGGCACAGAGTGTTCCGCAGATGATACTGT
TGACCTTCGACGATGCCATCAATCACGATAACTGGGAGCTGTTCTCCAAG
GTTTTGTTCACACAGCACAGGCGAAACCCCAACGGGTGTCCCATTAAGGC
ACATTCTACGTTTCACATCCGTTTACCAACTATCAGTATGTGCAGAAGCT
TTGGAACGATGGTCACGAGATCGCAGTGCACTCAGTAACGCATCGTGCCA
AAGATGTGGTGGTCCAAGAATGCCACATTGAGATGGTTCGATGAGATGGT
GGCAGCGATTAATCAATAGTCGCACGTACGATGGAGGAATCTGGCATGAA
GTACCCTTCTGGCCGTCGCTGATCGAAGTTCTCATGGTGA
UFO06250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ChLD3-RA | 2265 | CG17905-RA | 147..1254 | 9..1090 | 4850 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16740571..16741305 | 207..940 | 3625 | 99.9 | Plus |
| 2L | 23513712 | 2L | 16738996..16739194 | 9..207 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:55 has no hits.
UFO06250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:25 Download gff for
UFO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 145..1165 | 9..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:21 Download gff for
UFO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 147..1167 | 9..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:26 Download gff for
UFO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 147..1167 | 9..1018 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:26 Download gff for
UFO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16738996..16739194 | 9..207 | 100 | -> | Plus |
| 2L | 16740572..16741304 | 208..939 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:21 Download gff for
UFO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16738996..16739194 | 9..207 | 100 | -> | Plus |
| arm_2L | 16740572..16741304 | 208..939 | 99 | -> | Plus |
