UFO06251.5prime Sequence
1124 bp (1007 high quality bases) assembled on 2009-08-20
> UFO06251.5prime
CAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAGCCATGATT
GTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGCAGCCTGGC
CATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTACAGCTTCA
ATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGAGCAACTTA
CGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACCAATAACGC
CGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAGCTCATCCA
CCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGGATGGGGCG
CCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCGCGCCACCT
GCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCGGGCGCTGC
TCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTTCGGAGGTG
CACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTACCGCCACCA
CATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGACGCCCAGCT
ACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGAATCCGGCA
ACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCCATCTCCGA
CTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTTCGAGCAGC
TGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACTGGGGCCCG
GTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTGCTCTACTT
TCCGCTCTCGCAGCTGCTCTTCATCAGCGGCGAGCGGCTGATCATGGATC
CCGCCTACGAGATTGGACGCGTACAGGACTTCCTCGGTCTGAAAGCGCGT
GTCACCGAAAAAGCACTTCTACTTCAATGCCCCAAGGGCTTCCCCTGCCT
CTTCAAGTCGGAGGCACGCTCCCGCCCCCTGTCTGGGTAGAACCAGGGGC
CCACCATCCGCCATAGATCCCGGCCATCGAGCGCCTCAGGAGTCTACGAC
CTCCAACACAAGTCTACAGCTGAC
UFO06251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs3st-B-RB | 2265 | CG7890-RB | 503..1632 | 9..1124 | 5125 | 97.8 | Plus |
| Hs3st-B-RA | 2092 | CG7890-RA | 154..1283 | 9..1124 | 5125 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19249735..19250202 | 188..655 | 2340 | 100 | Plus |
| X | 23542271 | X | 19250754..19251192 | 656..1087 | 1640 | 95.2 | Plus |
| X | 23542271 | X | 19249141..19249323 | 9..191 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:56:43 has no hits.
UFO06251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:24 Download gff for
UFO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-B-RA | 60..1165 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:31 Download gff for
UFO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-B-RA | 147..1252 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:27 Download gff for
UFO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-B-RA | 147..1252 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:27 Download gff for
UFO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19249134..19249323 | 1..191 | 97 | -> | Plus |
| X | 19249739..19250202 | 192..655 | 100 | -> | Plus |
| X | 19250754..19251205 | 656..1101 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:31 Download gff for
UFO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19143167..19143356 | 1..191 | 97 | -> | Plus |
| arm_X | 19143772..19144235 | 192..655 | 100 | -> | Plus |
| arm_X | 19144787..19145238 | 656..1101 | 95 | | Plus |
