UFO06255.5prime Sequence
1121 bp (1004 high quality bases) assembled on 2009-08-20
> UFO06255.5prime
CAGTCGACATGGGATTGAGAAATTCCAAGGAAAAGCAGAGCAATGAAGTG
AAAACTTCGAAGCAAGCACCAAAGGCGCAGGTGAACCCTGAACCCCCAGC
TCCACCCAACAAACCGGAACCCGAGGTGGATCACAGTGATTTGGTGCCCA
AGTGGCTGAATCAAACGCAATTTGAGGAATTACTCGCCGCCGATGTGGAT
CAGTTCTCCAAGATAGTGGGCTTCCGGGTGAAGCCAGCGATGGCACCGGG
AGAAAACTATGCCACTCTAATGCTCAGGATCAGCATAGATGTGGAGCTCA
CTGACAAGAGCACTAAGCTGGTCTCCTTCATGATGAAAGTGCCACACGAT
ACTCCGCAAATGGAACAAATGATGAGCATGGCCAACTTCTTTACCAGCGA
GAACGCAGCCTACACTGAGATTCTACCGAAAATGGAGGAGCTCTATAAGG
CCAAGGGTCTGGACATCAAATTCGCTCCGCGAGCATTCAAACTGGACGCC
ACCAAGGAGCCCAAGGTGGCTAATACGGTGCTGATGCACGATCTCGGTCA
GAATGGTTTCAAAAACATAAACCGACTGGAGTGCCTGAACCTGGAGCAAA
CCAAGTTCGCATTGACCAGACTAGCACAGTTCCATGCAGCGGGAGCGACA
ATGGTCCAGGTGCATGGACCCTATCCCGACATATTCGTAAACGGCGTGAT
GGGAAACAACAAGGAAGCTATTATTGCATTCATGGAGGGCATGTTGGCAT
CCTTTAGAACGTCGTTTATGGCCAATCTGGATAAGTTCAAGAACGGAGAA
GAATATCGGGAGAAGCTTGAAAAGCTCTAGCTGGCCTAACTATGGAGTTC
ATGAAACTTGGTATCGTCGATCCCAACGAGTTTAATGCGCTAAACCATGG
CGATTGCTGGATGAATAATCTTCTGTTCAGATGAACTCCAGCGGGGACTT
GGAGGATATGGTCTTTGTCGATTTCAGAATCCAAATACGCTCTCCTGCCA
TGGATCTGCTCTACTCATCATTTCTCGGTCAAATGATACAGCTGACAATT
TGACTTTTCATCAGCATACAGAGCACTGGTAGGCTGGCATTGGATCTGCG
AAGCCTCCGTGAGGATGACGA
UFO06255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6830-RA | 2781 | CG6830-RA | 90..1159 | 9..1064 | 4995 | 98.6 | Plus |
| CG6834-RA | 2886 | CG6834-RA | 255..1109 | 139..989 | 1455 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11683150..11683666 | 819..303 | 2585 | 100 | Minus |
| 3R | 32079331 | 3R | 11683959..11684253 | 303..9 | 1475 | 100 | Minus |
| 3R | 32079331 | 3R | 11682887..11683086 | 1015..820 | 800 | 98 | Minus |
| 3R | 32079331 | 3R | 11686915..11687426 | 814..303 | 760 | 76.6 | Minus |
| 3R | 32079331 | 3R | 11687715..11687879 | 303..139 | 630 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:27 has no hits.
UFO06255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:22 Download gff for
UFO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6830-RA | 88..1129 | 9..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:29 Download gff for
UFO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6830-RA | 90..1131 | 9..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:58 Download gff for
UFO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6830-RA | 90..1131 | 9..1040 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:58 Download gff for
UFO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11682887..11683088 | 819..1015 | 97 | <- | Minus |
| 3R | 11683151..11683665 | 304..818 | 100 | <- | Minus |
| 3R | 11683959..11684253 | 9..303 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:29 Download gff for
UFO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7508609..7508810 | 819..1015 | 97 | <- | Minus |
| arm_3R | 7508873..7509387 | 304..818 | 100 | <- | Minus |
| arm_3R | 7509681..7509975 | 9..303 | 100 | | Minus |
