UFO06256.5prime Sequence
1083 bp (980 high quality bases) assembled on 2009-08-20
> UFO06256.5prime
CAGTCGACATGGTTTATCACCATCACAACCACGAAAGTCGGATAATACAC
TGCAGAAAACAATTAACTTCCTGGCGGAGAAGAAGCCTGCTGCTGACCAT
CATTGTGGTCACAGCCACAGTGGTTTCACTGATTTCACAAGAAGCCGAGG
CCCACAATCAGAATGCACCACCGATTCTATATGTTCGCGAACGCAACTGG
CGTATTTCGGAGACCGAGAAAGTTGGCCAGATAATCGATAGAGTGCGGGC
GGAGGATCCGGATGGCGATGATCTGATATTTGGCATAGAACCGCGATTCA
GTCTGCCTGGTGGTGAAAACGATGCTAGTCCTCCGGAGAAGATACCCTTT
CAAATTGATCGAGAAACGGGAGTGGTAACTCTCAATGAAAGTTTGGCAGG
AAGGGCTGGTCAGAATTTTCTCATCTATATAACTGTCACCGATGGCTCCT
ATACGGCAAAGAATGAGGTTTTCATCAATATCTTGGGCGAGCGGGAGAAT
AGCTCCGGCTATCGACCGCAGACATCAATTTCGAACGTGGTGCACAATAT
ATCGCAATTCCTTCCACGTTTTGACCAGCTGCCCGGTGTTCAATCCATCC
GGAATGGGCTGCCAAACAGCCGACCAGGCGGTTGGTATCCACCGGTGCCC
CAGAACAATATATTCGGTCCGCCGCCATTCGGTAACAACTACCCACCGCC
TCCGCCGAATATTCCCGGCGTGCGGGGAGAGCAGAGTGGAGAAGAGGAGC
AGCCGGATGAGGAGGTGACACCCACAACACCCGTCAGAATCAGCTCCACC
ACGCCGAAGAGTCGCACCAAACTGACGCCGATAACTGCCAATAATTCAAC
GAGAGTCGAATCCGCAATCCCCGCGGAGACACGACACCGAGTGGCGGCCC
CATAATATAGCTCCAGTCCCATCACATTTTCTCCCTCAAGTCCGCACAAT
TCCGATGTGGTCACCGTGGGGGATTCTTTGTCGCCATCGCCGTGCTTCTG
GCGTACTTGTGCGGCGAGCTTGCGCATCAGCAGACGCTAGAGACAGGCAG
AGGACTGGCAGAGTCACAGCAGCTGACGCCTGA
UFO06256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cad96Ca-RA | 2939 | CG10244-RA | 210..1257 | 9..1043 | 4885 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25203903..25204518 | 1012..404 | 2730 | 98.9 | Minus |
| 3R | 32079331 | 3R | 25204582..25204844 | 405..143 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 25206913..25207048 | 144..9 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:11 has no hits.
UFO06256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:21 Download gff for
UFO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Ca-RA | 204..1235 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:12 Download gff for
UFO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Ca-RA | 206..1237 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:50 Download gff for
UFO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Ca-RA | 206..1237 | 1..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:50 Download gff for
UFO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25203886..25204517 | 405..1025 | 98 | <- | Minus |
| 3R | 25204583..25204842 | 145..404 | 100 | <- | Minus |
| 3R | 25206913..25207052 | 1..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:12 Download gff for
UFO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21029608..21030239 | 405..1025 | 98 | <- | Minus |
| arm_3R | 21030305..21030564 | 145..404 | 100 | <- | Minus |
| arm_3R | 21032635..21032774 | 1..144 | 97 | | Minus |
