UFO06259.5prime Sequence
1104 bp (996 high quality bases) assembled on 2009-08-20
> UFO06259.5prime
CAGTCGACATGGGTCTGGGCGCCACTACAGTGAAGCATGTGCTGCTTTTG
CTGAACTTTGTGTTTTCCGTGCTCGGGCTGGCGCTGATCGCCTTCGGAAT
TTTCTTTTTGATCTCCGCCGCTGAGAATGCAGTCAGCATTGGGAAAAATG
TGGCCGGGGGCCTAATCATCGCCTTGGGCGTTGTCATCCTCATCATTGCG
ATCTTCGGCTGCCTGGCTGCCATCCATGAGGCTCCTGTGAGGCTCCTCAT
ATATGTGGGAGCCGTGGTGCTGCTGATCCTCGCCCAGCTAATTTTTCTCG
GCATGTCCTCACACGGCACCAAGGATGGAATCTCGGGCAGCATCAACGAG
GGATTCGACCGTCTCTGGGAATCGGAGCGCAACCAAACAGGCGCCTTGAG
CTACTACGAGTCCTGGCTGCAGTGCTGCGGGGTCAACAGTTCCGAGGACT
ACTGGATCATCCATCATGGCATTCCGTCCAGCTGTTGTCCAGAAAGCAAG
TGCATGGACACTCCGAGCAGGGTCTTCAAGACGGGCTGCAAGGCCGCATT
CGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGTCTGCTGGT
TGCTTGTCATCGGAGAGGCTGTGGGAGCTGTTTTCGGTTGGCTGCTCTAC
AGCAGCGTAAAGAACCAAAGCCGCCGCAACAATGCCGTCTGGATGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCTGCCACTCAT
CGCAGTACTGTTGTATTCATTAAGCATTCTGCCGACATGCAGCCATCCCA
AACGGCATGATGACCTGAATCGCCAGCGGCATCAGAACTGTCGCCTTGCG
TATAAATTGCCATGGTGAACGGGCGAAAGTGTTCTATTGGCCGTTAATCA
ACTG
UFO06259.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ei-RB | 1140 | CG12843-RB | 211..898 | 8..695 | 3440 | 100 | Plus |
| Tsp42Ei-RA | 1304 | CG12843-RA | 211..898 | 8..695 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7036043..7036409 | 252..618 | 1835 | 100 | Plus |
| 2R | 25286936 | 2R | 7035470..7035652 | 69..251 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 7036464..7036543 | 616..695 | 400 | 100 | Plus |
| 2R | 25286936 | 2R | 7035335..7035398 | 8..71 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:41 has no hits.
UFO06259.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:27 Download gff for
UFO06259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 202..896 | 1..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:52 Download gff for
UFO06259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 204..898 | 1..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:20 Download gff for
UFO06259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ei-RA | 204..898 | 1..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:20 Download gff for
UFO06259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7035328..7035395 | 1..68 | 95 | -> | Plus |
| 2R | 7035470..7035652 | 69..251 | 100 | -> | Plus |
| 2R | 7036043..7036408 | 252..617 | 100 | -> | Plus |
| 2R | 7036466..7036558 | 618..707 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:52 Download gff for
UFO06259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2923971..2924063 | 618..707 | 92 | -> | Plus |
| arm_2R | 2922833..2922900 | 1..68 | 95 | -> | Plus |
| arm_2R | 2922975..2923157 | 69..251 | 100 | -> | Plus |
| arm_2R | 2923548..2923913 | 252..617 | 100 | -> | Plus |
