UFO06262.5prime Sequence
1118 bp (1025 high quality bases) assembled on 2009-08-20
> UFO06262.5prime
CAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGACGCGCCCA
GATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAACAAATTGGC
AGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCAAGTGGATG
AGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGAAGCGAAAA
AATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGCGTTGATCC
GCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTGCTTTGTGC
GGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCCAGAAGTAC
GACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATCAACGCTGA
GGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACACCGCCCACC
TACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCTGTCCCACG
GAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGCGGACTCAC
CAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCACGCTGGATA
TCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGCAGCACCCG
CACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAGAACGTGGG
CGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGAGTGGGACT
TCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGTGCCCGTAC
TTCTACCTGTGTGCCAACACTTTTACGTGCTGTTCCGAGCTGCCGGAGTT
GGCGGTCGGCCGGAGAGCCACGCCTTGGTCACGCCGTCGACTCGGGGAAT
GCGGCAAGCTCTGCGACAGGAGGGGATCGAGTTCAGCATGCCTCTTAAGA
GCGATAACAGTGGAAACGCGCACGACACAGTTTTACGAGGAGAGCACTAC
CACCTCGCTAGGTTCAGAGCGGGGCGAGAATGCTTCTCCGCCGCCAGAGA
TGAACACACAGACTGGCTGGAAGCTGGCTGATGACGTGACTGCACGTTCC
AGTCTCAATGCAGAGCAC
UFO06262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hd-RA | 1927 | CG2669-RA | 136..1175 | 7..1043 | 5020 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5373344..5374175 | 1043..215 | 3905 | 98.8 | Minus |
| 3R | 32079331 | 3R | 5374233..5374390 | 214..57 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 5374450..5374499 | 56..7 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 639..693 | 70..123 | 119 | 70.9 | Plus |
UFO06262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:16 Download gff for
UFO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hd-RA | 127..1163 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:29 Download gff for
UFO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hd-RA | 130..1166 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:56 Download gff for
UFO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hd-RA | 130..1166 | 1..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:56 Download gff for
UFO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5373353..5374175 | 215..1034 | 99 | <- | Minus |
| 3R | 5374233..5374390 | 57..214 | 100 | <- | Minus |
| 3R | 5374450..5374505 | 1..56 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:29 Download gff for
UFO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1199075..1199897 | 215..1034 | 99 | <- | Minus |
| arm_3R | 1199955..1200112 | 57..214 | 100 | <- | Minus |
| arm_3R | 1200172..1200227 | 1..56 | 94 | | Minus |
