UFO06265.5prime Sequence
1126 bp (994 high quality bases) assembled on 2009-08-20
> UFO06265.5prime
CAGTCGACATGCTGACCCTGCGGGAGCGCCAAATCAATGCCATTAAGCAG
ATGCTTAATTTGAACTCGCAGCAGCCGAAAGCCCTAGCTGCCGAGCCCGT
GTGGAAGATCCTTATCTACGATCGCGTTGGCCAGGACATCATATCGCCCA
TTATTTCCATCAAGGAGCTGCGCGAGTTGGGCGTGACGCTGCATGTGCAA
CTGCACTCGGATCGCGACTCCATTCCGGATGTGCCGGCTATATACTTCTG
CCTGCCCACCGACGAGAATTTGGACAGGATTCAGCAGGACTTCTCGAGCG
GACTGTACGACGTGTACCACCTGAACTTCCTAGCTCCCATAACGCGCAGC
AAAATCGAGAATCTGGCCGCCGCAGCCCTGCATGCCGGCTGCGTGGCCAA
CATCCATCGCGTTTACGACCAGTATGTGAACTTCATCAGTCTAGAGGATG
ACTTCTTCATCCTAAAGCACCAGCAGAGCGATCAGCTTTCATACTACGCC
ATCAACCGGGCCAACACCCGCGATGAAGAGATGGAGGCCCTGATGGACTC
CATTGTAGACTCGCTCTTCGCCCTGTTTGTGACCCTGGGCAATGTGCCCA
TCATCCGCTGTCCGCGGAACAGTGCCGCTGAAATGGTGGCACGCAAGCTG
GAGAAGAAGCTGCGCGAGAACCTTTGGGATGCGCGTGCCAATTTGTTCCA
CATGGATGCCACGCAAGCCGGCGGCGGAGTGTTCAGCTTTCAGAGACCTG
TGCTCCTGCTGCTGGACAGGAACATGGATTTAGCCACGCCGCTCCATCAC
ACCTGGTCGTATCAGCGCTTGTGCACGATGTACTGGACTTGGGACTGAAT
CTTGTCTACGTGGAGGACGAGACGGCTAGTGCGGGAGCCCGCAAAAACCC
AAGGCCTGTGACTTGGACCGCAACGACCGCTTCTGGATGACGCACAAGGG
CAGTCATTTTCTCACGGGGGCGAAGCCATCCAGGAGGAGCTGGATCCTAT
TCGGACTCCAGGAGGAGATCAGCGCTTGAAACTCGATGGGTATCAGGGGG
ATCGACTTGCATTCCTCTTTGGTCATGAACCACGCAGCTCACATGCGTCA
TCCTGCCCACTGATGAAAACAACTGA
UFO06265.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 4220 | CG3539-RG | 152..1229 | 9..1075 | 4935 | 98.1 | Plus |
| Slh-RC | 2197 | CG3539-RC | 152..1229 | 9..1075 | 4935 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2491512..2492201 | 885..197 | 3385 | 99.7 | Minus |
| 2L | 23513712 | 2L | 2492258..2492418 | 197..37 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 2491331..2491433 | 994..893 | 405 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:40:14 has no hits.
UFO06265.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:13 Download gff for
UFO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RF | 147..1208 | 9..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:28 Download gff for
UFO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..1219 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:14 Download gff for
UFO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..1219 | 9..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:14 Download gff for
UFO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2491509..2492201 | 197..887 | 99 | <- | Minus |
| 2L | 2492259..2492418 | 37..196 | 100 | <- | Minus |
| 2L | 2492493..2492520 | 9..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:28 Download gff for
UFO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2491509..2492201 | 197..887 | 99 | <- | Minus |
| arm_2L | 2492259..2492418 | 37..196 | 100 | <- | Minus |
| arm_2L | 2492493..2492520 | 9..36 | 100 | | Minus |
