UFO06266.5prime Sequence
1109 bp (998 high quality bases) assembled on 2009-08-20
> UFO06266.5prime
CAGTCGACATGTCGCGGAATCAGGATCTCTGCCTGGCGGTATTCGCCCTC
TTGACCACCGCGGGCATTTCCCATGGAGCTCCCCAAATGGGTCGTGTGGT
CAATGGCACGGATTCCAGCGTGGAGAAATACCCCTTCGTGATTTCGATGC
GTGGATCCAGTGGCTCGCATTCCTGCGGTGGCTCCATTATTTCCAAGCAG
TTTGTAATGACTGCTGCTCATTGTACGGATGGACGCAAGGCATCGGATTT
GTCTGTTCAGTATGGAGTGACTAAGATTAATGCCACCGGTCCGAATGTGG
TGCGCGTGAAGAAGATCATCCAGCACGAGGATTATAATCCCTACAACAAC
TATGCCAACGATATTTCACTGCTGCTCGTGGAGGAGCCATTCGAGTTTGA
TGGCGTCACGGTTGCACCCGTAAAGTTGCCGGAGCTCGCCTTTGCCACAC
CTCAAACGGATGCCGGTGGCGAGGGGGTGCTCATCGGATGGGGACTCAAT
GCGACTGGCGGATACATCCAATCCACACTGCAGGAGGTGGAATTGAAGGT
CTACTCAGACGAGGAGTGCACCGAACGCCATGGCGGTCGCACCGATCCCA
GGTACCACATCTGCGGAGGGGTGGACGAGGGTGGCAAGGGACAGTGCAGC
GGAGATTCGGGTGGACCCCTCATCTACAATGGCCAGCAGGTGGGCATCGT
GTCGTGGAGCATCAAGCCCTGCACCGTGGCACCCTATCCGGGTGTTTACT
GCAAGGTCAGCCAGTATGTTGACTGGATCAAGAAGAGCCAGATCATCTTG
GCCGCCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAATTCAGATGGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCAGCGAGCTCGATATCAATTACGCGACTGCAATCA
TCGCAGTACTGTTGTATTCATTAGCATTCTGCCGATGAGCATCCAACGCA
TGATGACTG
UFO06266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16749-RA | 873 | CG16749-RA | 7..801 | 9..803 | 3960 | 99.9 | Plus |
| CG12951-RA | 857 | CG12951-RA | 94..779 | 96..781 | 1060 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9331320..9331683 | 503..140 | 1805 | 99.7 | Minus |
| 3R | 32079331 | 3R | 9330957..9331257 | 803..503 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 9329301..9329488 | 781..594 | 670 | 90.4 | Minus |
| 3R | 32079331 | 3R | 9331748..9331879 | 140..9 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 9329643..9329983 | 501..161 | 430 | 75.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:56:38 has no hits.
UFO06266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:11 Download gff for
UFO06266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16749-RA | 17..811 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:26 Download gff for
UFO06266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16749-RA | 1..801 | 6..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:23 Download gff for
UFO06266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16749-RA | 1..801 | 6..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:23 Download gff for
UFO06266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9330957..9331256 | 504..803 | 100 | <- | Minus |
| 3R | 9331320..9331682 | 141..503 | 99 | <- | Minus |
| 3R | 9331748..9331879 | 9..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:26 Download gff for
UFO06266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5156679..5156978 | 504..803 | 100 | <- | Minus |
| arm_3R | 5157042..5157404 | 141..503 | 99 | <- | Minus |
| arm_3R | 5157470..5157601 | 9..140 | 100 | | Minus |
